Sign in
Cancer BiologyMethods in molecular biology
Peer-reviewed journal article

Assessment of Stiffness-Dependent Autophagosome Formation and Apoptosis in Embryonal Rhabdomyosarcoma Tumor Cells

Serap SezeniD, Sevin AdiguzeliD, Atefeh ZarepouriD, Arezoo KhosraviiD, Joseph W. GordoniD, Saeid GhavamiiD, Ali ZarrabiiD

Abstract

Summary/AbstractRemodeling of the extracellular matrix (ECM) eventually causes the stiffening of tumors and changes to the microenvironment. The stiffening alters the biological processes in cancer cells due to altered signaling through cell surface receptors. Autophagy, a key catabolic process in normal and cancer cells, is thought to be involved in mechano-transduction and the level of autophagy is probably stiffness-dependent. Here, we provide a methodology to study the effect of matrix stiffness on autophagy in embryonal rhabdomyosarcoma cells. To mimic stiffness, we seeded cells on GelMA hydrogel matrices with defined stiffness and evaluated autophagy-related endpoints. We also evaluated autophagy dependent pathways, apoptosis, and cell viability. Specifically, we utilized immunocytochemistry and confocal microscopy to track autophagosome formation through LC3 lipidation. This approach suggests that the use GelMA hydrogels with defined stiffness represent a novel method to evaluate the role of autophagy in embryonal rhabdomyosarcoma and other cancer cells. Workflow O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=198 SRC="FIGDIR/small/583012v1_ufig1.gif" ALT="Figure 1"> View larger version (92K): org.highwire.dtl.DTLVardef@127453borg.highwire.dtl.DTLVardef@1325f8dorg.highwire.dtl.DTLVardef@1f2de0org.highwire.dtl.DTLVardef@fd0494_HPS_FORMAT_FIGEXP M_FIG C_FIG

PDFDOI

02 /Specification & Classification

Click any tag to browse matching papers
Citations
1
FWCI
1.10
Field percentile
top 36%

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.

Similarity Map
SelectedSame fieldCross-field
THISRząca '25Wise '23Metwally '26Cruz-Acuna '22Beslmüller '25Pourmostafa '25
67% semantic matchBiophysics
Carina Rząca, Agata Kubisiak, Dominik Panek+2 more·bioRxiv·Sep 22, 2025