bioRxivBioengineering
Engineering Rotating Apical-Out Airway Organoid for Assessing Respiratory Cilia Motility
P. Wijesekara, P. Yadav, L. A. Perkins, D. Stolz, J. M. Franks, S. Watkins, E. R. Jacome, S. L. Brody, A. Horani, J. Xu, A. Barati farimani, X. Ren
Abstract
Motile cilia project from the airway apical surface and directly interface with inhaled external environment. Due to cilias nanoscale dimension and high beating frequency, quantitative assessment of their motility remains a sophisticated task. Here we described a robust approach for reproducible engineering of apical-out airway organoid (AOAO) of defined size. Propelled by exterior-facing cilia beating, the mature AOAO exhibited stable rotational motion when surrounded by Matrigel. We developed a computational framework leveraging computer vision algorithms to quantify AOAO rotation and validated its correlation with direct measurement of cilia motility. We further established the feasibility of using AOAO rotation to recapitulate and measure defective cilia motility caused by chemotherapy-induced toxicity and by CCDC39 mutations in cells from primary ciliary dyskinesia patient. We expect our rotating AOAO model and the associated computational pipeline to offer a generalizable framework to expediate modeling of and therapeutic development for genetic and environmental ciliopathies.
- organism: human
- assay: organoid / primary culture
- research focus: cell type annotation
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Development of a Xenopus-based assay for high-throughput evaluation of mucociliary flow
I. Antoniades, A. Koulle, … P. A. Skourides·bioRxiv·Jul 12, 2022
- Personalized multi-assay profiling of respiratory motile ciliopathies and mRNA therapy
Georgia N. Ithakisiou, Pim Cleijpool, … Bahar Yetkin-Arik·bioRxiv·May 23, 2026
- MS4A8B regulates Orai1-dependent Ca2+ influx to control motile cilia function in human nasal epithelial cells
Alexander A. Simon, Ray Z. Ma, … Robert J. Lee·bioRxiv·Aug 20, 2026
- Recapitulating apicobasal tissue polarity in extracellular matrix incorporated airway organoids
Zhuowei Gong, Dhruv Bhattaram, … Xi Ren·BiomaterialsPeer-reviewed·Feb 18, 2026
- 3D nanoscale architecture of the respiratory epithelium reveals motile cilia-rootlets-mitochondria axis of communication
Aaran Vijayakumaran, Christopher Godbehere, … Vito Mennella·Cell ReportsPeer-reviewed·Jul 1, 2026
- AggreBots: configuring CiliaBots through guided, modular tissue aggregation
Dhruv Bhattaram, Keyvan Golestan, … Xi Ren·bioRxiv·Feb 22, 2025