bioRxivGeneticsPreprint
Heteroplasmic Mitochondrial Genetic Variation in the Human Heart
Liying XueiD, Xianbang Sun, Jesse D. MoreiraiD, Yi LiiD, Karan K. Smith, Robert F. PaderaiD, Marc E. LenburgiD, Daniel A LevyiD, Emelia J. BenjaminiD, Deepa Mangalat GopaliD, Chunyu LiuiD, Jessica L. FettermaniD
- Citations
- 0
Abstract
Whether heteroplasmic mitochondrial genetic variants in readily accessible tissues (blood, skeletal muscle) reflect those in the human heart (atrial appendage, left ventricle) is unknown. Using next generation sequencing data from paired tissue samples (n=233) collected postmortem in the Genotype-Tissue Expression project, we identified 558 unique heteroplasmic mitochondrial genetic variants across the four tissues, of which only 13% were shared across all four tissue sites. Between the two cardiac sites, 61% of heteroplasmic mitochondrial genetic variants were unique to one site. A greater proportion of the heteroplasmic variants were non-synonymous or frameshift variants in the muscle sites compared to blood or those variants shared across all four tissues. Compared to blood, the total number of heteroplasmic variants was higher in cardiac tissue, which was associated with advancing age. Our findings suggest that human cardiac tissue has unique heteroplasmic mtDNA variants and may be relevant to aging-related diseases.
- organism: human
- assay: whole-genome sequencing
- research focus: differential expression
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Tissue-specific apparent mtDNA heteroplasmy and its relationship with ageing and mtDNA gene expression
Simon Wengert, Xenofon Giannoulis, … Na Cai·bioRxiv·Dec 11, 2024
- Age-related and heteroplasmy-related variation in human mtDNA copy number
Manja Wachsmuth, Alexander Huebner, … Mark Stoneking·PLOS GeneticsPeer-reviewed·Mar 15, 2016
- Nuclear genetic control of mtDNA copy number and heteroplasmy in humans
Rahul Gupta, Masahiro Kanai, … Vamsi Krishna Mootha·NaturePeer-reviewed·Aug 16, 2023
- Pathogenic mitochondrial genome variation, heteroplasmy thresholding and mitochondrial constraint measures in a healthy older cohort
Eloise C. Watson, Gordon Qian, … Carolyn M. Sue·medRxiv·Jun 29, 2026
- Sharing of heteroplasmies between human liver lobes varies across the mtDNA genome
Alexander Hübner, Manja Wachsmuth, … Mark Stoneking·Scientific ReportsPeer-reviewed·Aug 2, 2019
- A catalog of homoplasmic and heteroplasmic mitochondrial DNA variants in humans
Alexandre Bolze, Fernando Luis Mendez, … Nicole L. Washington·bioRxiv·Jun 26, 2020