PLoS ONEMicrobiologyPeer-reviewed journal article
You Only Look Once (YOLO) Based Machine Learning Algorithm for Real-Time Detection of Loop-Mediated Isothermal Amplification (LAMP) Diagnostics
Biniyam Kahsay MezgeboiD, Ryan ChaffeeiD, L. Ricardo Castellanos, S. Ashraf, Jack Burke-Gaffney, Johann D D PitoutiD, Bogdan Iuliu IorgaiD, Matthew Ethan MacDonaldiD, Dylan R. PillaiiD
Abstract
Loop-mediated isothermal amplification (LAMP) is a widely used rapid and affordable molecular DNA amplification method with minimal resource requirements. However, visual interpretation of results is subjective and prone to errors, leading to potential false-positive and negative results. To address this limitation, a machine-learning approach is proposed for automated LAMP classification based on digital images. The approach utilizes You Only Look Once (YOLOv8), a fast and robust object detection algorithm to locate and classify tubes within LAMP images, enabling automated categorization as positive or negative. The trained model achieved a high overall accuracy of 95.5% in classifying LAMP images into positive or negative. Additionally, the approach had a 98.0% precision and 92.7% recall for positive cases and 93.4% precision and 98.2% recall for negative cases, demonstrating its potential for real-time LAMP diagnosis and enhanced assay performance. This project demonstrated the platforms suitability for real-time testing, offering an easy operation and rapid results.
- assay: imaging
- research focus: cell type annotation
- research focus: differential expression
- approach: deep learning
- approach: machine learning (classical)
- Citations
- 2
- FWCI
- 1.70
- Field percentile
- top 21%
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