Author

Emmanuel O. Elijah

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Systems Biology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:metabolomics· 3 Research Focus:database / resource· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Pieter C. DorresteiniD· 4 shared Rob D. KnightiD· 4 shared Alan K. JarmuschiD· 3 shared Christine M. AcevesiD· 3 shared Fernando VargasiD· 3 shared Julia M. GauglitziD· 3 shared Kelly C. WeldoniD· 3 shared Mingxun WangiD· 3 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersSystems Biology

Pieter C. DorresteinORCID

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Author profile →

4 papers

Recent·Most cited

Time of Sample Collection Critical for Microbiome Replicability

Celeste Allaband, Amulya Lingaraju, Stephany Flores Ramos, Tanya Kumar, Haniyeh Javaheri, Maria Denalene Tiu, Ana Carolina Dantas Machado, R. Alexander Richter, Emmanuel O. Elijah, Gabriel G. Haddad, Vanessa Leone, Pieter C. Dorrestein, Rob D. Knight, Amir Zarrinpar

The paper shows that sample collection time significantly affects microbiome study conclusions, more than experimental interventions or dietary changes.

bioRxiv · Oct 26, 2022 · PreprintSystems Biology

Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

Alan K. Jarmusch, Mingxun Wang, Christine M. Aceves, Rohit S. Advani, Shaden Aguirre, Alexander A. Aksenov, Gajender Aleti, Allegra T. Aron, Anelize Bauermeister, Sanjana Bolleddu, Amina Bouslimani, Andrés Mauricio Caraballo‐Rodríguez, Rama Chaar, Roxana Coras, Emmanuel O. Elijah, , Pieter C. Dorrestein

The paper develops ReDU, a tool for discovering and re-analyzing metabolomics data in GNPS, following FAIR principles.

Nature Methods · Aug 17, 2020Peer-reviewedBioinformatics

Reference data based insights expand understanding of human metabolomes

Julia M. Gauglitz, Wout Bittremieux, Candace Lareine Williams, Kelly C. Weldon, Morgan W. Panitchpakdi, Francesca Di Ottavio, Christine M. Aceves, Elizabeth Brown, Nicole C. Sikora, Alan K. Jarmusch, Cameron Martino, Anupriya Tripathi, Erfan Sayyari, Justin P. Shaffer, Roxana Coras, , Pieter C. Dorrestein

This paper expands the interpretability of human metabolomes by using food-based annotations, increasing the fraction of molecular features understood 7-fold.

bioRxiv · Jul 8, 2020 · PreprintSystems Biology

MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data.

Mingxun Wang, Alan K. Jarmusch, Fernando Vargas, Alexander A. Aksenov, Julia M. Gauglitz, Kelly C. Weldon, Daniel Petras, Ricardo Silva, Robby Quinn, Alexey V. Melnik, Justin J. J. van der Hooft, Andrés Mauricio Caraballo‐Rodríguez, Louis-Félix Nothias-Scaglia, Christine M. Aceves, Morgan W. Panitchpakdi, , Pieter C. Dorrestein

MASST enables querying of public small-molecule tandem MS data to discover molecular relationships in metabolomics and natural product datasets.

bioRxiv · Mar 28, 2019 · PreprintBioinformatics