bioRxivGenomicsPreprint
A novel single-cell RNA-sequencing platform and its applicability connecting genotype to phenotype in ageing-disease
Orr ShomroniiD, Maren SitteiD, Julia SchmidtiD, Sabnam Parbin, Fabian Ludewig, Gökhan YigitiD, Laura Cecilia ZelarayaniD, Katrin Streckfuß‐BömekeiD, Bernd WollnikiD, Gabriela SalinasiD
Abstract
Advances in single cell multi-omics analysis such as the ability of a genotype to show phenotypic diversity lead to a comprehensive understanding of cellular events in human diseases. The cardinal feature to access this information is the technology used for single-cell isolation, barcoding, and sequencing. While numerous platforms have been reported for single-cell RNA-sequencing, technical enhancements are needed in terms of highly purified single cell selection, cell documentation or limitations in cell sizing and chemistry. In this study, we present a novel high-throughput platform using a full-length RNA-sequencing approach that offers substantial technical improvements of all parameters. We applied this platform to dermal fibroblasts derived from six patients with different segmental progeria syndromes and defined phenotype-associated pathway signatures and variant-associated expression modifiers. These results validate the applicability of our platform to highlight genotype-expression relationships for molecular phenotyping in ageing disorders.
- organism: human
- assay: scRNA-seq
- research focus: cell type annotation
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: experimental assay
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Single-cell transcriptomes of the aging human skin reveal loss of fibroblast priming
L. Sole-Boldo, G. Raddatz, … F. Lyko·bioRxiv·May 9, 2019
- A murine aging cell atlas reveals cell identity and tissue-specific trajectories of aging
Jacob C. Kimmel, Lolita Penland, … Adam Z. Rosenthal·Genome ResearchPeer-reviewed·Dec 1, 2019
- Scalable single-cell isoform profiling with sequencing-by-expansion
Christophe H. Georgescu, Ghamdan Al‐Eryani, … Aziz M. Al’Khafaji·bioRxiv·Jul 28, 2026
- Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.
Martin Enge, H. Efsun Arda, … Stephen R. Quake·CellPeer-reviewed·Sep 29, 2017
- Comparative analysis of commercially available single-cell RNA sequencing platforms for their performance in complex human tissues
Yue Julia Wang, Jonathan Schug, … Klaus H. Kaestner·bioRxiv·Feb 5, 2019
- Linked optical and gene expression profiling of single cells at high throughput
J. Q. Zhang, C. A. Siltanen, … A. R. Abate·bioRxiv·Sep 12, 2019