bioRxivPlant Biology
A hierarchical transcriptional network activates specific CDK inhibitors that regulate G2 to control cell size and number in Arabidopsis
Y. Nomoto, H. Takatsuka, K. Yamada, T. Suzuki, T. Suzuki, Y. Huang, D. Latrasse, J. An, M. Gombos, C. Breuer, T. Ishida, K. Maeo, M. Imamura, T. Yamashino, K. Sugimoto, Z. Magyar, L. Bogre, C. Raynaud, M. Benhamed, M. Ito
Abstract
How cell size and number are determined during organ development remains a fundamental question in cell biology. Here, we identified a GRAS family transcription factor, called SCARECROW-LIKE28 (SCL28), with a critical role in determining cell size in Arabidopsis. SCL28 is part of a transcriptional regulatory network downstream of the central MYB3Rs that regulate G2 to M phase cell cycle transition. We show that SCL28 forms a dimer with the AP2-type transcription factor, AtSMOS1, which defines the specificity for promoter binding and directly activates transcription of a specific set of SIAMESE-RELATED (SMR) family genes, encoding plant-specific inhibitors of cyclin-dependent kinases and thus inhibiting cell cycle progression at G2 and promoting the onset of endoreplication. Through this dose-dependent regulation of SMR transcription, SCL28 quantitatively sets the balance between cell size and number without dramatically changing final organ size. We propose that this hierarchical transcriptional network constitutes a cell cycle regulatory mechanism that allows to adjust cell size and number to attain robust organ growth.
- organism: Arabidopsis
- assay: DNA methylation
- assay: proteomics
- research focus: cell type annotation
- research focus: gene regulatory network inference
- research focus: differential expression
- approach: experimental assay
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- SCL28 promotes cell expansion and endoreplication in Arabidopsis by activating SIAMESE-RELATED cyclin-dependent kinase inhibitors.
C. Goldy, V. L. Barrera, … R. E. Rodriguez·bioRxiv·Aug 10, 2021
- Arabidopsis RETINOBLASTOMA-RELATED controls cell size during plant development in a dose-dependent manner
Rasik Shiekh Bin Hamid, Fruzsina Vadai‐Nagy, … Zoltán Magyar·bioRxiv·Apr 1, 2026
- The G1/S transition in mammalian stem cells in vivo is autonomously regulated by cell size
Shicong Xie, Shuyuan Zhang, … Jan Marcel Skotheim·Nature CommunicationsPeer-reviewed·Oct 13, 2025
- The Role of SIAMESE in G2 Checkpoint Regulation in Arabidopsis thaliana
Martha Adele Schwall, Frances Kerin Clark, … J. M. Larkin·New PhytologistPeer-reviewed·Feb 6, 2026
- Synergistic CDK control pathways maintain cell size homeostasis
J. O. Patterson, S. Basu, … P. Nurse·bioRxiv·Nov 25, 2020
- A cell size threshold triggers commitment to stomatal fate in Arabidopsis
Yan Gong, Renee Dale, … Dominique C. Bergmann·Science AdvancesPeer-reviewed·Sep 20, 2023