bioRxivNeurosciencePreprint
The proto-oncogene DEK regulates neuronal excitability and tau accumulation in Alzheimer's disease vulnerable neurons
Patricia Rodriguez‐RodrigueziD, Luis Enrique Arroyo‐GarcíaiD, Lechuan LiiD, Christina Tsagkogianni, Wei WangiD, Isabella Salas-AllendeiD, Zakary Plautz, Ángel Cedazo-Mı́ngueziD, Subhash C. SinhaiD, Olga G. TroyanskayaiD, Marc FlajoletiD, Vicky YaoiD, Jean-Pierre RoussarieiD
Abstract
Neurons from layer II of the entorhinal cortex (ECII) are the first to accumulate tau protein aggregates and degenerate during prodromal Alzheimers disease. Here, we use a data-driven functional genomics approach to model ECII neurons in silico and identify the proto-oncogene DEK as a potential driver of tau pathology. By modulating DEK levels in EC neurons in vitro and in vivo, we first validate the accuracy and cell-type specificity of our network predictions. We then show that Dek silencing changes the inducibility of immediate early genes and alters neuron excitability, leading to dysregulation of neuronal plasticity genes. We further find that loss of function of DEK leads to tau accumulation in the soma of ECII neurons, reactivity of surrounding microglia, and eventually microglia-mediated neuron loss. This study validates a pathological gene discovery tool that opens new therapeutic avenues and sheds light on a novel pathway driving tau pathology in vulnerable neurons.
- organism: human
- assay: bulk RNA-seq
- research focus: gene regulatory network inference
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Non-mutated human tau stimulates Alzheimer's disease-relevant neurodegeneration in a microglia-dependent manner
Ethan R. Roy, Qiang Wang, … Wei Cao·Scientific ReportsPeer-reviewed·Jul 29, 2025
- Intrinsic molecular susceptibility underlies selective neuronal vulnerability in the Alzheimer's disease entorhinal cortex
Samuel L Boulger, Daniela Lerose, … Paul McMahan Matthews·bioRxiv·Jun 26, 2026
- Neuronal activity and amyloid-beta cause tau seeding in the entorhinal cortex in Alzheimer's disease
Christoffer G. Alexandersen, Danielle S. Bassett, … the Alzheimer’s Disease Neuroimaging Initiative·bioRxiv·Mar 7, 2025
- Pharmacological potentiation of Nav1.1 channels in interneurons mitigates tau depositions and neuronal death in a mouse model of neurodegenerative dementias
Kazuaki Sampei, Junya Hirokawa, … Masafumi Shimojo·bioRxiv·Aug 20, 2025
- Altered excitatory and inhibitory neuronal subpopulation parameters are distinctly associated with tau and amyloid in Alzheimer's disease
Kamalini G. Ranasinghe, Parul Verma, … Srikantan S. Nagarajan·eLifePeer-reviewed·May 20, 2022
- Cell-type specific profiling of human entorhinal cortex at the onset of Alzheimer's disease neuropathology
Patricia Rodriguez‐Rodriguez, Wei Wang, … Jean-Pierre Roussarie·bioRxiv·Dec 31, 2024