Interpretable Deep Learning of Endogenous Fluorophore Concentration and Entropy for Lung Tissue Classification
Abstract
Fluorophore concentration measures and local histogram entropy describe different aspects of endogenous fluorophore maps. We investigate whether their combination improves discrimination between normal and cancerous lung tissue and which features contribute to predictions. Chemometric fluorescence microscopy (CFM) provides concentration maps of tryptophan, elastin, reduced nicotinamide adenine dinucleotide (NADH), and flavin adenine dinucleotide (FAD). A neural network based on generalized additive models with structured interactions (GAMI-Net) is used to compare concentration-only, entropy-only, and combined representations through explicit main effects and pairwise interactions. The mean areas under the receiver operating characteristic curve (ROC AUCs) across five-fold cross-validation were $95.9\% \pm 0.7\%$, $96.4\% \pm 1.6\%$, and $98.4\% \pm 0.7\%$, respectively; variability is reported as standard deviation (SD). Their aggregate differences are consistent with the hypothesis of complementary predictive information. FAD entropy, NADH concentration, and NADH entropy were the leading main effects in the combined model. The learned log-odds contributions include a U-shaped elastin-entropy relationship and nonmonotonic tryptophan relationships. By exposing how concentration and entropy enter predictions, this interpretable framework turns label-free fluorescence classification into specific, testable hypotheses about tissue metabolism and extracellular-matrix organization, motivating specimen-grouped and external validation.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Machine learning prediction of cancer cell metabolism from autofluorescence lifetime images
- Decreased green autofluorescence intensity of lung parenchyma is a potential non-invasive diagnostic biomarker for lung cancer
Mingchao Zhang, Yujia Li, … Weihai Ying·bioRxiv·Jun 10, 2018
- Deep learning diffusion fingerprinting to detect brain tumour response to chemotherapy
Tom A. Roberts, Ben Hipwell, … Simon Walker-Samuel·bioRxiv·Sep 25, 2017
- Transforming Hyperspectral Data into Insight: The DREAM Approach for Pathology
Mason Hong, Daniel E. S. Koo, … Francesco Cutrale·Biomedical Optics ExpressPeer-reviewed·Oct 7, 2025
- Selectively increased autofluorescence at certain regions of skin may become a novel diagnostic biomarker for lung cancer
- Label-free sensing of cells with fluorescence lifetime imaging: the quest for metabolic heterogeneity
E. A. Shirshin, M. V. Shirmanova, … M. O. Scully·bioRxiv·Jan 12, 2022