bioRxivImmunologyPreprint
webMCP-counter: a web interface for transcriptomics-based quantification of immune and stromal cells in heterogeneous human or murine samples
M. Meylan, E. Becht, C. Sautes-Fridman, A. de Reynies, W. H. Fridman, F. Petitprez
Abstract
SummaryWe previously reported MCP-counter and mMCP-counter, methods that allow precise estimation of the immune and stromal composition of human and murine samples from bulk transcriptomic data, but they were only distributed as R packages. Here, we report webMCP-counter, a user-friendly web interface to allow all users to use these methods, regardless of their proficiency in the R programming language. Availability and ImplementationFreely available from http://134.157.229.105:3838/webMCP/. Website developed with the R package shiny. Source code available from GitHub: https://github.com/FPetitprez/webMCP-counter.
- organism: human
- organism: mouse
- assay: bulk RNA-seq
- research focus: cell type annotation
- approach: experimental assay
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