Regulation of a Classical Allosteric Molecular Machine by an Intrinsically Disordered Domain: the C-termini of GroEL

Abstract

The bacterial chaperonin GroEL is a canonical example of an ATP-dependent molecular machine that must couple ligand binding to productive conformational work. GroEL passes through a series of distinct structural shifts, driven by ATP binding and hydrolysis, which power a facilitated protein folding reaction. How the complex allostery of the GroEL oligomer creates a folding cycle that is both efficient and directional remains incompletely understood. Here, we combine variable-temperature native ion mass spectrometry with single-molecule FRET to examine how the intrinsically disordered, highly conserved GroEL C-terminal tails impact the allosteric behavior of a single GroEL ring. Our observations show that the C-terminal tails restrain the conformational dynamics of the GroEL ring, most likely through direct interactions with the upper apical domains of the GroEL subunits, a constraint that is progressively released as ATP binds. These results support a model in which the C-terminal tails act as an entropic regulator of the GroEL reaction cycle: transient interactions between the tails and GroEL apical domains restrain premature ring opening and tune the energetic threshold for productive engagement by the smaller GroES co-chaperonin. By linking disordered tail dynamics to the classically cooperative reorganization of the GroEL ring, this mechanism enforces an ordered allosteric cascade that minimizes wasteful formation of empty GroEL-GroES cavities. These findings reveal how the conformational properties of an intrinsically disordered element can be exploited to optimize the energetic efficiency and functional timing of a large allosteric machine.