Quantifying photosynthetic restrictions
This paper develops a consistent framework to quantify photosynthetic restrictions and provides examples to demonstrate its application.
Photosynthesis Research · Feb 18, 2025Peer-reviewedPlant Biology
Topic · Molecular Biology · Biochemistry, Genetics and Molecular Biology
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
493 papers
This paper develops a consistent framework to quantify photosynthetic restrictions and provides examples to demonstrate its application.
Photosynthesis Research · Feb 18, 2025Peer-reviewedPlant Biology
Renu Saini, Avinash Garg, Ananya Debnath
This study uses coarse-grained simulations to investigate dynamic disorder in chlorophyll aggregation and LHCII conformations in plant thylakoid membranes, revealing non-exponential decay and multiple time scales in dimer formation and inter-CLA fluctuations.
bioRxiv · Feb 18, 2025 · PreprintBiophysics
Frauke Caliebe, Ravi Shankar Ojha, Marco Gruber, Marko Boehm, Lu Shen, Christopher Bräsen, Jacky L. Snoep, Karl Forchhammer, Martin Hagemann, Bettina Siebers, Kirstin Gutekunst
This study identifies FBPase in Synechocystis as a monofunctional enzyme that supports heterotrophic growth without redox regulation, distinct from the bifunctional F/SBPase.
bioRxiv · Feb 14, 2025 · PreprintPlant Biology
Cécile Giustini, Davide Dal Bo, Mattia Storti, Mick Van Vlierberghe, Denis Baurain, Pierre Cardol, Youjun Zhang, Alisdair Robert Fernie, Duncan Fitzpatrick, Eva–Mari Aro, Guillaume Allorent, Pascal Albanese, Dimitri Tolleter, Gilles Curien, Giovanni Finazzi
This study identifies a mitochondrial carrier transporter in diatoms that facilitates energy exchange between mitochondria and plastids, supporting photosynthesis.
bioRxiv · Feb 14, 2025 · PreprintPlant Biology
Pierrick Bru, Aurélie Crepin, Yolande Provot, Zeno Guardini, Roberto Bassi, Luca Dall’Osto, Alizée Malnoë
This study shows that minor antennae in Arabidopsis can be quenched by qH, but are not strictly required for qH induction, suggesting they act as a secondary safety valve for photoprotective energy dissipation.
bioRxiv · Feb 11, 2025 · PreprintPlant Biology
Coralie E. Salesse‐Smith, Noga Adar, Baskaran Kannan, Thaibinhduong Nguyen, Wei Wei, Ming Guo, Zhengxiang Ge, Fredy Altpeter, Tom Elmo Clemente, Stephen P. Long
This paper shows that increasing Rubisco content in sorghum and sugarcane through genetic modification improves photosynthetic efficiency and productivity, with field and greenhouse trials showing biomass increases of 15.5% and 37-81% respectively.
Proceedings of the National Academy of Sciences · Feb 11, 2025Peer-reviewedPlant Biology
Shenghai Chang, Weiwei Wang, Michael T. Madigan, Long-Jiang Yu, Haichun Gao, Zheng‐Yu Wang‐Otomo, Xing Zhang, Jing‐Hua Chen
This paper reports the ultrahigh-resolution structure of a form-IAq RuBisCO from Thermochromatium tepidum, revealing structural features contributing to its thermostability.
bioRxiv · Feb 9, 2025 · PreprintPlant Biology
Nina Maryn, Antonio Chaparro, Audrey Short, Graham R. Fleming, Krishna Niyogi
The paper examines rapid NPQ kinetics in ferns, finding faster induction and relaxation compared to other species, with implications for adaptation to light fluctuations.
bioRxiv · Feb 7, 2025 · PreprintPlant Biology
Yuta Kato, Takao Oi, Yoshikatsu Sato, Mitsutaka Taniguchi
The paper uses live leaf-section imaging to show that bundle sheath cells mediate mesophyll chloroplast aggregation in C4 plants.
Scientific Reports · Feb 3, 2025Peer-reviewedPlant Biology
Michał Gabruk, Mateusz Łuszczyński, Katarzyna Szafran, Wiktoria Ogrodzińska, Brenda M. Rubenstein, Gabriel Monteiro da Silva
The paper characterizes LPOR isoform properties across six plant species, revealing differences in Chlide affinity, oligomerization, and conformational flexibility, with four mobile regions identified via AlphaFold2.
Journal of Biological Chemistry · Feb 3, 2025Peer-reviewedBiochemistry
Elinor Aviv‐Sharon, Laure D. Sultan, Leah Naveh, Dana Charuvi, Meital Kupervaser, Ziv Reich, Zach Adam
This study shows that the thylakoid lumen Deg1 protease regulates non-photochemical quenching by controlling the levels of violaxanthin de-epoxidase and PsbS proteins in Arabidopsis.
The Plant Journal · Feb 1, 2025Peer-reviewedPlant Biology
Punyatoya Panda, Swagarika Jaharlal Giri, Louis A. Sherman, Daisuke Kihara, Uma K. Aryal
This study uses proteomic analysis to examine how extended light or dark conditions affect protein expression in the cyanobacterium Crocosphaera subtropica, identifying key proteases involved in photosynthetic regulation.
Journal of Proteome Research · Jan 29, 2025Peer-reviewedMicrobiology
Ryo Nagao, Haruya Ogawa, Takehiro Suzuki, Naoshi Dohmae, Koji Kato, Yoshiki Nakajima, Jian‐Ren Shen
The paper identifies a novel chlorophyll a/b-binding protein, RedCAP, in the PSI-LHCI supercomplexes of Galdieria sulphuraria, highlighting its distinct binding properties and spectral characteristics compared to LHC proteins.
Photosynthesis Research · Jan 27, 2025Peer-reviewedPlant Biology
Sanchali Nanda, Maximiliano Cainzos, Tatiana Shutova, Nazeer Fataftah, Verena Fleig, Jenna Lihavainen, Pushan Bag, Alfred R. Holzwarth, Stefan Jansson
The paper identifies spillover as the dominant NPQ mechanism in angiosperms using spectroscopic analysis and genetic mutants.
bioRxiv · Jan 26, 2025 · PreprintPlant Biology
María Santos‐Merino, Lauri Nikkanen, Emmanuel J. Kokarakis, Yagut Allahverdiyeva, Daniel C. Ducat
The paper shows that plastoquinone redox status affects carboxysome integrity through a RpaA- and ROS-dependent network in cyanobacteria.
bioRxiv · Jan 24, 2025 · PreprintSynthetic Biology
Tatsuhiro Tsurumaki, Kan Tanaka
This study investigates how NblS, a histidine kinase in Synechococcus elongatus, senses stress by interacting with PSII proteins and responding to redox changes.
bioRxiv · Jan 21, 2025 · PreprintPlant Biology
Yogeswari Rajarathinam, Luisa Wittemeier, Kirstin Gutekunst, Martin Hagemann, Joachim Kopka
This paper develops a method to distinguish RUBISCO activity from CBB cycle activities by analyzing carbon positional labeling in 3PGA using GC-MS after 13CO2 labeling.
PLANT PHYSIOLOGY · Jan 21, 2025Peer-reviewedPlant Biology
Zhufeng Chen, Jing Li, Bai‐Chen Wang, Lijin Tian
This study uses two-photon FLIM to analyze photosynthetic properties of maize bundle sheath cells in vivo, revealing reduced PSII activity and acetic acid-induced fluorescence quenching.
Photosynthesis Research · Jan 21, 2025Peer-reviewedPhysiology
Hu Yuan Sun, Nils Schmidt, Tracy Lawson, Martin Hagemann, Stefan Timm
The paper manipulates photorespiration in Arabidopsis guard cells and finds it significantly affects stomatal behavior, growth, and photosynthesis.
bioRxiv · Jan 21, 2025 · PreprintPlant Biology
Mackenzie C. Poirier, Kassandra Fugard, Marina Cvetkovska
This study examines how light quality affects chlorophyll biosynthesis and photosynthetic performance in two Antarctic Chlamydomonas species under extreme conditions.
Photosynthesis Research · Jan 20, 2025Peer-reviewedPlant Biology
Alain Boussac, Julien Sellés, Miwa Sugiura
The paper investigates the kinetics of S0 state reformation in PSII after O2 release, finding similar kinetics to the S3TyrZ* to S0TyrZ transition, suggesting no delay for substrate water insertion.
Photosynthesis Research · Jan 14, 2025Peer-reviewedBiochemistry
Grace Milburn, Cheyenne M. Morris, Eileen Kosola, Dhruv Patel‐Tupper, Jian Liu, Dominique H. Pham, Lucia Acosta‐Gamboa, William D. Stone, Sarah A. Pardi, Kylee Hillman, William McHargue, Eric Becker, Xiaojun Kang, Josh Sumner, Catherine Bailey, , Ru Zhang
This study overexpresses NPQ genes in C4 plant Setaria viridis to compare photoprotection mechanisms with C3 plants, finding shared and unique traits that could improve crop resilience.
bioRxiv · Jan 12, 2025 · PreprintPlant Biology
Matthias Reimers, Mario Jakob, Ralf Bernd Klösgen
The paper identifies the trimeric TatC core as the stable component of the TatBC receptor complex, with TatB subunits bound independently.
bioRxiv · Jan 10, 2025 · PreprintCell Biology
Ichiro Terashima, Riichi Oguchi, Kimie Atsuzawa, Yasuko Kaneko, Masaru Kono
The paper measures excitation spillover from PSII to PSI in leaves at 77K and finds that spillover ratios are comparable across growth light conditions and higher in State 1.
Plant and Cell Physiology · Jan 7, 2025Peer-reviewedPlant Biology
Jonas M. Böhm, Simone Willms, Oja Ferrao, Martin Buitrago-Arango, Meike Hüdig, Gereon Poschmann, Nazanin Fazelnia, Luitgard Nagel‐Steger, Sebastián Klinke, Athina Drakonaki, Christos Gatsogiannis, Marcos Ariel Tronconi, Clarisa E. Álvarez, Verónica Graciela Maurino
This study investigates how amino acid changes in C4-NADP-ME and nonC4-NADP-ME enzymes affect their oligomeric states and function in Poaceae species.
bioRxiv · Jan 5, 2025 · PreprintEvolutionary Biology
Mariam V. Mohagheghi, Ali Navid, Thomas Mossington, Congwang Ye, Matthew A. Coleman, Steven Honag-Phou
The paper develops a chloroplast media to sustain ex vivo chloroplast function using metabolic modeling and isolated chloroplasts from Chlamydomonas reinhardtii.
bioRxiv · Jan 3, 2025 · PreprintBioengineering
Tanner A. Robison, Zhen Guo Oh, Declan J. Lafferty, Xia Xu, Juan Carlos A. Villarreal, Laura H. Gunn, Fay‐Wei Li
This study investigates the pyrenoid-based CO2-concentrating mechanism in hornworts, revealing conserved components and a spatial model similar to Chlamydomonas.
Nature Plants · Jan 3, 2025Peer-reviewedPlant Biology
Dhananjay Gotarkar, Anthony Digrado, Yu Wang, Lynn Doran, Ignacio Sparrow‐Muñoz, Sarah Chung, N. Kinch Lisa, Farwah Wasiq, Gerardo Amaro, Bethany Blakely, Brian W. Diers, Daniel J. Eck, Steven Burgess
The paper measures NPQ relaxation variation in soybean genotypes to assess its potential for improving photosynthesis and yield.
The Plant Journal · Jan 1, 2025Peer-reviewedPlant Biology
Friederike Allgöwer, Abhishek Sirohiwal, Ana P. Gámiz‐Hernández, Maximilian C. Pöverlein, Andrea Fantuzzi, Alfred William Rutherford, Ville R. I. Kaila
The paper investigates how substituting chlorophyll d for chlorophyll a at the ChlD1 site in PSII shifts the spectral range beyond far-red light, using quantum mechanical calculations and simulations.
Chemical Science · Jan 1, 2025Peer-reviewedBiophysics
Kaustubh Amritkar, Bruno Cuevas-Zuviría, Betül Kaçar
The paper analyzes the evolutionary dynamics of RuBisCO, showing how the small subunit influenced the enzyme's conformational flexibility and response to atmospheric changes.
Molecular Biology and Evolution · Dec 27, 2024Peer-reviewedEvolutionary Biology