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363,000+ bioRxiv, medRxiv, and peer-reviewed papers across 26 biological disciplines.
Recent preprints
- BioinformaticsGigabytePeer-reviewed✦ In-depth digest
vardictcpp: A C++ reimplementation of VarDict variant caller
An AI-assisted C++17 port of VarDictJava gives byte-identical calls on five exome samples while running 3.7-4.8 times faster on one core and needing 8-17 times less memory.
1 citation - PhysiologyAmerican Journal of Physiology-Gastrointestinal and Liver PhysiologyPeer-reviewed
Epithelial function of the circadian clock gene, Bmal1, in regulating the mucosa.
Zainab Taleb, CHRISTIAN EDWARDS, Ryan Wan…·Phillip A. Karpowicz
This study shows that Bmal1 in colon epithelial cells promotes mucus production and is essential for sex-specific tissue regeneration after injury.
DOI 10.1152/ajpgi.00154.2026 - NeuroscienceActa Neuropathologica CommunicationsPeer-reviewed
Proximity labeling reveals unique and shared interactomes of unmodified and pyroglutamate amyloid beta in human hippocampus in Alzheimers disease
Alia O. Alia, Kristy Urquhart, Hannah Carson…·L. Yu. Romanova
This study uses proximity labeling to compare the interactomes of pyroglutamate-modified and unmodified amyloid beta in AD and control hippocampus, identifying unique and shared protein interactions.
DOI 10.1186/s40478-026-02441-5 - Plant BiologyAoB PlantsPeer-reviewed
A transparent window into the rhizosphere: a simplified workflow for spatially resolved soil metabolomics
Harihar Jaishree Subrahmaniam, Paul Moritz, Péter Becker…·Kai Jensen
This paper introduces a low-cost rhizobox platform for spatially resolved soil metabolomics under realistic conditions, showing reliable plant growth and species-specific metabolite profiles.
1 citation - PhysiologyAmerican Journal of Physiology-Cell PhysiologyPeer-reviewed
Loss of LanC-like proteins impairs post-injury regeneration of aging muscles
Adriana Reyes‐Ordoñez, Tianhui Hina Zhou, Tarun C. Rao…·Jie Chen
This study shows that LanCL proteins are essential for muscle regeneration in aging mice, as their loss impairs regeneration and increases inflammation.
DOI 10.1152/ajpcell.00313.2026 - ImmunologyJournal of Clinical InvestigationPeer-reviewed
Engineered NKG2C+ NK-like T cells exhibit superior antitumor efficacy while mitigating cytokine release syndrome
Kyle B. Lupo, M. Kazim Panjwani, Aya G. Halawi…·Katharine C. Hsu
This study shows that engineered NKG2C+ NK-like T cells have better antitumor effects and lower cytokine release syndrome risk than conventional CAR-T and CAR-NK cells.
- BioinformaticsJournal of Applied CrystallographyPeer-reviewed
TorchRef: An open-source PyTorch Framework for Crystallographic Refinement
Hans Peter Seidel, Jörg Standfuss, Tobias Weinert
TorchRef provides a PyTorch framework for crystallographic refinement, offering GPU acceleration and modular design for developing new refinement protocols.
DOI 10.1107/s1600576726009258 - BiophysicsPLANT PHYSIOLOGYPeer-reviewed
Time- Space Resolved Fluorescence Spectroscopy in Live Chlamydomonas Cells under Light-Harvesting Regulation
Yuki Fujita, XianJun Zhang, Shen Ye, Yutaka Shibata
The paper develops a time-space resolved fluorescence spectroscopy technique to study light-harvesting dynamics in Chlamydomonas cells under state transitions.
- GenomicsGigaSciencePeer-reviewed
Genomic in vitro transcription and Nanopore direct RNA sequencing of a human B-Lymphocyte cell line
Talia Tzadikario, Stuart Akeson, Sally Dorer…·Miten Jain
The paper uses in vitro transcribed RNA from genomic DNA to benchmark RNA modification detection by Nanopore direct RNA sequencing models.
8 citationstop 2% - NeuroscienceeLifePeer-reviewed
Multiplexed CRISPRi Reveals a Transcriptional Switch Between KLF Activators and Repressors in the Maturing Neocortex
Ryan W Kirk, Sun Liwei, Ruixuan Xiao…·Sacha B. Nelson
The paper identifies a transcriptional switch in KLF activators and repressors during postnatal neuronal maturation using CRISPRi and integrates chromatin and gene expression data.
1 citation - Genetic & Genomic MedicineFrontiers in Cell and Developmental BiologyPeer-reviewed
DNA methylation alterations in MIR10B, MIR21, MIR100, MIR127 and MIR143 genes associated with advanced carotid artery atherosclerosis: a targeted bisulfite sequencing study of vascular tissues and peripheral blood
Iuliia A. Koroleva, A. A. Zarubin, Anton Markov…·Maria S. Nazarenko
DOI 10.3389/fcell.2026.1948449 - PhysiologyTranslational Vision Science & TechnologyPeer-reviewed
A Translational Reference for Green Autofluorescence Imaging in the Rhesus Macaque Eye using the OcuMet Beacon
Ana Ripolles‐Garcia, Jaegook Lim, Ana Claudia Santos Raposo…·Sara M. Thomasy
This study establishes normative green autofluorescence (GAF) values in rhesus macaques across different retinal regions and links GAF to age, intraocular pressure, and retinal structure.
- Cell BiologyeLifePeer-reviewed
Syntaxin11 Deficiency Inhibits CRAC Channel Priming to Suppress Cytotoxicity and Gene Expression in T Lymphocytes Independent of Membrane Trafficking.
S. Datta, Abhikarsh Gupta, Kunal Mukesh Jagetiya…·Monika Vig
This study shows Syntaxin11 primes Orai1 for CRAC channel function, affecting T cell cytotoxicity and gene expression without impacting membrane trafficking.
DOI 10.7554/elife.111335.3 - BioinformaticsJournal of Computational BiologyPeer-reviewed
On Deriving Synteny Blocks by Compacting Elements
Leonard Bohnenkämper, Luca Parmigiani, Kamil Hepak…·Jens Stoye
This paper introduces a formal framework for deriving synteny blocks directly from sequence data to better capture genomic rearrangements without obscuring structural variation.
- Genetic & Genomic MedicineAmerican Journal of Medical Genetics Part APeer-reviewed
Neurobehavioral Profiles and Clinical Consequences of MYT1L-Related Neurodevelopmental Disorder: Insights from the Brain Gene Registry.
Jorge Luis Granadillo, Levi Kaster, Virginia Lanzotti…·Joseph D. Dougherty
This study characterizes MYT1L-Related Neurodevelopmental Disorder using data from the Brain Gene Registry, identifying cognitive, behavioral, and clinical features in affected individuals.
2 citationstop 5% - Cell BiologyThe Journal of Cell BiologyPeer-reviewed
ARF-1 Coordinates Cargo Sorting at FERARI Endosomal Recycling Hubs
Jachen A. Solinger, Curdin A. Franziscus, Trian Nuredini…·Anne Spang
This study identifies ARF-1 as a regulator of cargo sorting at FERARI-dependent endosomal recycling hubs through its cycling between active and inactive states.
DOI 10.1083/jcb.202512157 - ImmunologyScientific ReportsPeer-reviewed
A Thermo-responsive collapse system for controlling heterogeneous cell localization, ratio and interaction for three-dimensional solid tumor modeling
The paper introduces TheCOS, a thermo-responsive system for creating 3D tumor models with controlled cell localization and interactions, demonstrating its use in studying NK cell cytotoxicity in solid tumor environments.
2 citations - Cell BiologyThe Journal of Cell BiologyPeer-reviewed
A nematode-trapping fungus orchestrates polarity cues, septins, and NOX signaling for trap formation
Chih-Yen Kuo, Hung‐Che Lin, Yun-Zhen Chou…·Yen‐Ping Hsueh
This study identifies molecular mechanisms coordinating cell polarity, septins, and NOX signaling in nematode-trapping fungi for trap formation.
DOI 10.1083/jcb.202603155 - Developmental BiologyReproductionPeer-reviewed
Selective depletion of AMH-expressing granulosa cells in vivo impairs follicular development and fertility in female mice
Tsutomu Endo, Mayu Tamemasa, Kana Hayakawa…·Masami Kanai‐Azuma
DOI 10.1093/reprod/xaag131