Talia Tzadikario

The paper uses in vitro transcribed RNA from genomic DNA to benchmark RNA modification detection by Nanopore direct RNA sequencing models.

This paper introduces HS-nano-seq, a method to analyze heparan sulfate using nanopore sequencing, enabling single-molecule detection of sulfation patterns and structural features.

The paper introduces tRNAZAP, a deep learning method using nanopore ionic current signals to classify tRNA isodecoders, achieving better alignment results than BWA-MEM in E. coli and S. cerevisiae.

The paper uses ancient DNA from shells to analyze genetic stability and immune adaptation in black abalone post-bottleneck, finding delayed genomic erosion and rapid immune-related selection.

This paper evaluates updates to Nanopore direct RNA sequencing for detecting RNA modifications, showing improved accuracy in identifying pseudouridine and N6-methyladenosine.

This study shows that PUS7's cytoplasmic localization enhances stress tolerance by increasing pseudouridylation of mRNAs involved in metal and ROS homeostasis.