Author

A. Aydin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. El-Kenawi· 1 shared A. Hajiran· 1 shared A. J. Page· 1 shared A. Ravi· 1 shared A. Roberts· 1 shared B. J. Manley· 1 shared C. Moran-Segura· 1 shared E. Katende· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperCancer Biology

A. El-Kenawi

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Linking carbohydrate structure with function in the human gut microbiome using hybrid metagenome assemblies

A. Ravi, P. Troncoso-Rey, J. Ahn-Jarvis, K. R. Corbin, S. Harris, H. Harris, A. Aydin, G. L. Kay, T. Le-Viet, R. Gilroy, M. J. PALLEN, A. J. Page, J. O'Grady, F. Warren

This study uses hybrid metagenome assemblies to analyze how structurally distinct carbohydrates affect gut microbiome composition and function by identifying carbohydrate-degrading microbes and their enzymatic capabilities.

bioRxiv · May 11, 2021 · PreprintMicrobiology

Spatial Clustering of CD68+ Tumor Associated Macrophages with Tumor Cells is Associated with Worse Overall Survival in Metastatic Clear Cell Renal Cell Carcinoma

N. H. Chakiryan, G. Kimmel, Y. Kim, A. Hajiran, A. Aydin, L. Zemp, E. Katende, J. Nguyen, N. Lopez-Blanco, J. Chahoud, P. Spiess, M. Fournier, J. Dhillon, L. Wang, C. Moran-Segura, , B. J. Manley

The paper quantifies cellular density and clustering of immune cells in metastatic ccRCC and finds that CD68+ TAM clustering with tumor cells correlates with worse overall survival.

bioRxiv · Jan 4, 2021Cancer Biology

Identification of a Type IV CRISPR-Cas system located exclusively on IncHI1B/ IncFIB plasmids in Enterobacteriaceae

E. Newire, A. Aydin, S. Juma, V. Enne, A. Roberts

The paper identifies a novel Type IV-B CRISPR-Cas system on IncHI1B/IncFIB plasmids in Enterobacteriaceae, showing it is active and associated with mobile genetic elements.

bioRxiv · Jan 31, 2019Microbiology