Author

A. Bruneau

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4 Cell Biology· 2 Ecology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 6 Research Focus:phylogenetics / evolution· 4 Assay:bulk RNA-seq· 3 Research Focus:cell type annotation· 3 Assay:DNA methylation· 3 Approach:experimental assay· 3 Organism:human· 3 Organism:plant (other)· 3

Frequent Co-Authors

D. Ojeda· 2 shared E. Koenen· 2 shared J. Migliore· 2 shared L. David· 2 shared O. Hardy· 2 shared A. Aebli· 1 shared A. Dumay· 1 shared A. GAIGNERIE· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 8 mutual co-author links

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2 shared papersEvolutionary Biology

D. Ojeda

Mutual co-authors in cluster

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8 papers

Recent·Most cited

Complex Reticulation in Backbone Subfamily Relationships in Leguminosae

J. Stai, W. Cardinal-McTeague, A. Bruneau, S. B. Cannon

The paper resolves conflicting phylogenetic relationships in legumes by identifying independent whole genome duplications in six subfamilies, with evidence of ancient hybridization in three.

bioRxiv · Jul 12, 2024Evolutionary Biology

Combinatory differentiation of human induced pluripotent stem cells generates thymic epithelium that supports thymic crosstalk and directs dendritic- and CD4/CD8 T-cell full development

N. Provin, M. d'Arco, E. Kervagoret, A. Bruneau, L. Brusselle, C. Fourgeux, J. Poschmann, X. Saulquin, C. Guillonneau, L. David, M. Giraud

This study generates functional thymic epithelial cells from iPSCs that support T cell development and dendritic cell differentiation in vitro.

bioRxiv · Dec 23, 2023Immunology

Predicting leaf traits across functional groups using reflectance spectroscopy

S. Kothari, R. Beauchamp-Rioux, F. Blanchard, A. L. Crofts, A. Girard, X. Guilbeault-Mayers, P. W. Hacker, J. Pardo, A. K. Schweiger, S. Demers-Thibeault, A. Bruneau, N. C. Coops, M. Kalacska, M. Vellend, E. Laliberte

The paper develops models to predict leaf traits from reflectance spectra across functional groups and ecosystems, finding high accuracy for some traits but lower for others.

bioRxiv · Jul 1, 2022Ecology

Precipitation is the main axis of tropical phylogenetic turnover across space and time

J. J. Ringelberg, E. J. M. Koenen, B. Sauter, A. Aebli, J. G. Rando, J. R. Iganci, L. P. de Queiroz, D. J. Murphy, M. Gaudeul, A. Bruneau, M. Luckow, G. P. Lewis, J. T. Miller, M. F. Simon, L. S. B. Jordao, , C. E. Hughes

The paper shows that precipitation gradients drive phylogenetic turnover in Mimosoid legumes across tropical regions, with 95% of speciation occurring within a precipitation niche.

bioRxiv · May 27, 2022Evolutionary Biology

The Heterochromatin protein 1 is a master regulator in RNA splicing precision deficient in ulcerative colitis

J. Mata -Garrido, Y. Xiang, Y. Chang-Marchand, C. Reisacher, E. Ageron-ardila, C. Guerrera, I. Casafont, A. Bruneau, C. Cherbuy, X. Treton, A. Dumay, E. Ogier-Denis, E. Batsche, M. Costallat, G. Revechon, , L. Arbibe

This study identifies HP1γ as a regulator of RNA splicing in the gut, showing its deficiency leads to splicing errors and progerin production, linking it to ulcerative colitis and aging diseases.

bioRxiv · Dec 30, 2020Cell Biology

Generation of human induced trophoblast stem cells

G. CASTEL, D. MEISTERMANN, B. BRETIN, J. FIRMIN, J. BLIN, S. LOUBERSAC, A. BRUNEAU, S. CHEVOLLEAU, S. KILENS, C. CHARIAU, A. GAIGNERIE, Q. FRANCHETEAU, H. KAGAWA, E. CHARPENTIER, L. FLIPPE, , L. DAVID

This study generates human induced trophoblast stem cells (hiTSC) from post-natal cells using reprogramming and fate conversion, enabling diverse genetic modeling of placental development and disease.

bioRxiv · Sep 15, 2020Cell Biology

The Origin and Early Evolution of the Legumes are a Complex Paleopolyploid Phylogenomic Tangle closely associated with the Cretaceous-Paleogene (K-Pg) Boundary

E. Koenen, D. Ojeda, R. Steeves, J. Migliore, F. Bakker, J. Wieringa, C. Kidner, O. Hardy, T. Pennington, P. Herendeen, A. Bruneau, C. Hughes

This study investigates the origin and early evolution of legumes, finding multiple whole genome duplication events linked to the K-Pg boundary mass extinction and suggesting a complex polyploid history.

bioRxiv · Mar 16, 2019Evolutionary Biology

Phylogenomics within the Anthonotha clade (Detarioideae, Leguminosae) reveals a high diversity in floral trait shifts and a general trend towards organ number reduction

D. Ojeda, E. Koenen, S. Cervantes Arango, M. de la Estrella, E. Banguera-Hinestroza, S. Janssens, J. Migliore, B. Demenou, A. Bruneau, F. Forest, O. Hardy

This study uses phylogenomic data to analyze floral trait evolution in the Anthonotha clade, revealing high diversity in floral trait shifts and a trend towards organ number reduction.

bioRxiv · Jan 4, 2019 · PreprintEvolutionary Biology