Author

A. L. Zomer

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 6

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:host-pathogen & immune response· 3 Assay:metagenomics· 3 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Organism:chicken / avian· 1

Frequent Co-Authors

J. A. Wagenaar· 5 shared A. Swinkels· 2 shared E. A. J. Fischer· 2 shared L. Korving· 2 shared A. A. Vlasblom· 1 shared A. F. Swinkels· 1 shared A. J. H. Cremers· 1 shared B. Duim· 1 shared

Activity by Year

2017-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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5 shared papersMicrobiology

J. A. Wagenaar

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6 papers

Recent·Most cited

Flumequine, a fluoroquinolone in disguise

A. Swinkels, E. Fischer, L. Korving, R. Chirstodoulou, J. A. Wagenaar, A. L. Zomer

The paper investigates whether flumequine selects for the same resistance mechanisms in E. coli as enrofloxacin, finding similar SNPs in gyrA and comparable resistance rates.

bioRxiv · Apr 19, 2024Microbiology

Extended period of selection for antimicrobial resistance due to persistency of antimicrobials in broilers

A. F. Swinkels, B. J. A. Berendsen, E. A. J. Fischer, A. L. Zomer, J. A. Wagenaar

This study shows that persistent antimicrobials in broilers lead to prolonged antimicrobial resistance, while non-persistent ones have shorter effects.

bioRxiv · Apr 18, 2024 · PreprintMicrobiology

The developing pig respiratory microbiome harbours strains antagonistic to common respiratory pathogens

A. A. Vlasblom, B. Duim, S. Patel, R. Luiken, D. Crespo-Piazuelo, J. Eckenberger, C. E. Huseyin, P. G. Lawlor, C. Elend, J. A. Wagenaar, M. J. Claesson, A. L. Zomer

This study examines the longitudinal development of the piglet nasal microbiome and identifies microbial interactions that could help control respiratory pathogens.

bioRxiv · Dec 20, 2023 · PreprintMicrobiology

Defining minimal selective concentrations of amoxicillin, doxycycline and enrofloxacin in broiler-derived cecal fermentations by phenotype, microbiome and resistome

A. Swinkels, E. A. J. Fischer, L. Korving, N. Kusters, J. A. Wagenaar, A. L. Zomer

The paper determines the minimal selective concentrations of three antibiotics in broiler cecal fermentations to identify thresholds for antimicrobial resistance selection.

bioRxiv · Nov 21, 2023 · PreprintMicrobiology

Development of Kaptive databases for Vibrio parahaemolyticus O- and K-antigen serotyping

L. van der Graaf - van Bloois, H. Chen, J. A. Wagenaar, A. L. Zomer

The paper develops Kaptive databases for O- and K-antigen serotyping of Vibrio parahaemolyticus using whole genome sequencing data.

bioRxiv · Jul 6, 2021 · PreprintMicrobiology

The contribution of genetic variation of Streptococcus pneumoniae to the clinical manifestation of invasive pneumococcal disease

A. J. H. Cremers, F. M. Mobegi, C. van der Gaast-de Jongh, M. Van Weert, F. van Opzeeland, M. Vehkala, M. J. Knol, H. J. Bootsma, N. Valimaki, J. F. Meis, S. Bentley, S. A. F. T. van Hijum, J. Corander, A. L. Zomer, G. Ferwerda, M. I. de Jonge

This study identifies pneumococcal genetic variants associated with specific clinical outcomes of invasive pneumococcal disease using genome-wide association studies and validation in multiple cohorts.

bioRxiv · Jul 30, 2017Microbiology