Author

J. A. Wagenaar

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 6

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:host-pathogen & immune response· 3 Assay:metagenomics· 3 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Organism:chicken / avian· 1

Frequent Co-Authors

A. L. Zomer· 3 shared E. A. J. Fischer· 2 shared A. A. Vlasblom· 1 shared A. Bossers· 1 shared A. J. Stegeman· 1 shared A. L. Cawthorne· 1 shared A. L. Manson· 1 shared A. M. Dame-Korevaar· 1 shared

Activity by Year

2018-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 11 mutual co-author links

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3 shared papersMicrobiology

A. L. Zomer

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

The developing pig respiratory microbiome harbours strains antagonistic to common respiratory pathogens

A. A. Vlasblom, B. Duim, S. Patel, R. Luiken, D. Crespo-Piazuelo, J. Eckenberger, C. E. Huseyin, P. G. Lawlor, C. Elend, J. A. Wagenaar, M. J. Claesson, A. L. Zomer

This study examines the longitudinal development of the piglet nasal microbiome and identifies microbial interactions that could help control respiratory pathogens.

bioRxiv · Dec 20, 2023 · PreprintMicrobiology

Defining minimal selective concentrations of amoxicillin, doxycycline and enrofloxacin in broiler-derived cecal fermentations by phenotype, microbiome and resistome

A. Swinkels, E. A. J. Fischer, L. Korving, N. Kusters, J. A. Wagenaar, A. L. Zomer

The paper determines the minimal selective concentrations of three antibiotics in broiler cecal fermentations to identify thresholds for antimicrobial resistance selection.

bioRxiv · Nov 21, 2023 · PreprintMicrobiology

Global diversity of enterococci and description of 18 novel species

J. A. Schwartzman, F. Lebreton, R. Salamzade, M. J. Martin, K. Schaufler, A. Urhan, T. Abeel, I. L. B. C. Camargo, B. F. Sgardioli, J. Prichula, A. P. G. Frazzon, D. Van Tyne, G. Treinish, C. J. Innis, J. A. Wagenaar, , M. S. Gilmore

This study identifies 18 new enterococcal species from global samples, revealing host associations and genetic diversity within the genus.

bioRxiv · May 18, 2023 · PreprintMicrobiology

Comparing the transmission of carbapenemase-producing and extended-spectrum beta-lactamase-producing Escherichia coli between broiler chickens.

N. Dankittipong, J. B. Alderliesten, J. Van den Broek, A. M. Dame-Korevaar, M. S. Brouwer, F. C. Velkers, A. Bossers, C. J. de Vos, J. A. Wagenaar, A. J. Stegeman, E. A. J. Fischer

This study compares the transmission of carbapenemase-producing (CPE) and extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli between broiler chickens, finding CPE transmission rates were 52-68% lower than ESBL and chloramphenicol-resistant strains.

bioRxiv · Feb 21, 2023Microbiology

Development of Kaptive databases for Vibrio parahaemolyticus O- and K-antigen serotyping

L. van der Graaf - van Bloois, H. Chen, J. A. Wagenaar, A. L. Zomer

The paper develops Kaptive databases for O- and K-antigen serotyping of Vibrio parahaemolyticus using whole genome sequencing data.

bioRxiv · Jul 6, 2021 · PreprintMicrobiology

Proficiency of WHO Global Foodborne Infections Network External Quality Assurance System participants in the identification and susceptibility testing of thermo-tolerant Campylobacter spp. from 2003-2012.

S. K. Pedersen, J. A. Wagenaar, H. Vigre, L. Roer, M. Mikoleit, A. L. Cawthorne, F. M. Aarestrup, R. S. Hendriksen

The paper assesses the proficiency of WHO GFN EQAS participants in identifying and testing susceptibility of thermo-tolerant Campylobacter spp. from 2003-2012, finding improvements in AST but persistent gaps in identification, especially in African labs.

bioRxiv · Jun 30, 2018Microbiology