Author

A. Sokolov

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 3 Cancer Biology· 2 Microbiology· 2 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:imaging· 3 Approach:machine learning (classical)· 3 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:clustering· 2 Research Focus:drug response / drug discovery· 2 Organism:human· 2 Research Focus:cell type annotation· 1

Frequent Co-Authors

B. B. Aldridge· 2 shared B. Sittler· 2 shared D. Ehrich· 2 shared J. Lang· 2 shared J. Larkins-Ford· 2 shared N. Sokolova· 2 shared N. Van· 2 shared O. Gilg· 2 shared

Activity by Year

2019-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersMicrobiology

B. B. Aldridge

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

Ocean-scale variation in migration schedules of a long-distance migratory seabird is fully compensated upon return to the breeding site

R. S. A. van Bemmelen, B. Moe, H. Schekkerman, S. A. Hansen, K. R. S. Snell, E. M. Humphreys, E. Mantyla, G. T. Hallgrimsson, O. Gilg, D. Ehrich, J. Calladine, S. Hammer, S. J. Harris, J. Lang, S. R. Vignisson, , I. Tulp

The study tracks Arctic Skuas to show that migration timing variations are compensated upon return to breeding sites, with wintering area choices having minor effects on breeding timing.

Movement Ecology · Mar 22, 2024Peer-reviewedEcology

A versatile semiautomated image analysis workflow for time-lapsed camera trap image classification.

G. Celis, P. S. Ungar, A. Sokolov, N. Sokolova, H. Böhner, D. Liu, J. Ziker, O. Gilg, I. Fufachev, O. Pokrovskay, R. A. Ims, V. Ivanov, D. Ehrich

The paper introduces a semi-automated image analysis workflow for classifying time-lapsed camera trap images, achieving high accuracy and reducing manual inspection needs.

bioRxiv · Dec 28, 2022 · PreprintEcology

Design principles to assemble drug combinations for effective tuberculosis therapy using interpretable pairwise drug response measurements

J. Larkins-Ford, Y. N. Degefu, N. Van, A. Sokolov, B. B. Aldridge

The paper uses pairwise drug response data to train machine learning models predicting effective tuberculosis drug combinations, revealing design principles for rational combination therapy.

bioRxiv · Dec 5, 2021Microbiology

Systematic measurement of combination drug landscapes to predict in vivo treatment outcomes for tuberculosis

J. Larkins-Ford, T. Greenstein, N. Van, Y. N. Degefu, M. C. Olson, A. Sokolov, B. B. Aldridge

The paper systematically measures drug combinations to predict tuberculosis treatment outcomes using in vitro models and machine learning.

bioRxiv · Feb 3, 2021Microbiology

An IDH-independent mechanism of DNA hypermethylation upon VHL inactivation in cancer

A. V. Artemov, S. Zhenilo, D. Kaplun, A. Starshin, A. Sokolov, A. M. Mazur, J. Szpotan, M. Gawronski, M. Modrzejewska, D. Gackowski, E. B. Prokhortchouk

This study shows that VHL inactivation causes genome hypermethylation in kidney cancer cells through 2-hydroxyglutarate accumulation, independent of IDH mutations.

bioRxiv · Dec 9, 2020Cancer Biology

Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer

R. Rashid, G. Gaglia, Y.-A. Chen, J.-R. Lin, Z. Du, Z. Maliga, D. Schapiro, C. Yapp, J. Muhlich, A. Sokolov, P. Sorger, S. Santagata

The paper describes a dataset of multiplexed immunofluorescence images and single-cell immune marker data from human tonsil and lung cancer tissues, along with analysis methods and tools.

bioRxiv · Jul 17, 2019Cancer Biology

Effect of Alpha-Lactalbumin and Lactoferrin Oleic Acid Complexes on Chromatin Structural Organization

D. Lebedev, Y. Zabrodskaya, V. Pipich, A. Kuklin, E. Ramsay, A. Sokolov, A. Elizarova, A. Shaldzhyan, N. Grudinina, R. Pantina, B. Wu, T. Shtam, A. Volnitskiy, A. Shmidt, A. Shvetsov, , V. Egorov

This study investigates the structural properties of alpha-lactalbumin and lactoferrin oleic acid complexes and their interaction with chromatin, suggesting potential anti-tumor mechanisms.

bioRxiv · Jun 20, 2019Biophysics

No evidence for disruption of global patterns of nest predation in shorebirds

M. Bulla, J. Reneerkens, E. L. Weiser, A. Sokolov, A. R. Taylor, B. Sittler, B. J. McCaffery, D. R. Ruthrauff, D. H. Catlin, D. C. Payer, D. H. Ward, D. V. Solovyeva, E. S. Santos, E. Rakhimberdiev, E. Nol, , Leco

The paper challenges claims of climate change disrupting nest predation patterns in shorebirds, arguing that the original study's methodology is flawed and lacks statistical support.

bioRxiv · May 8, 2019Ecology