Author

Aaron S. Andalman

Stanford University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 3

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:cell-cell communication· 2 Approach:experimental assay· 2 Assay:imaging· 2 Organism:mouse· 2 Research Focus:trajectory inference· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1

Frequent Co-Authors

Karl A. DeisserothiD· 3 shared Ben Poole· 1 shared Charlotte ArltiD· 1 shared Charu RamakrishnaniD· 1 shared Christina K. KimiD· 1 shared Christopher D. HarveyiD· 1 shared Clayton P. MosheriD· 1 shared Conor M. ListoniD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersNeuroscience

Karl A. DeisserothORCID

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3 papers

Recent·Most cited

Inferring brain-wide interactions using data-constrained recurrent neural network models

Matthew G. Perich, Charlotte Arlt, Sofia Soares, Siyan Zhou, Manuel Beirán, Aaron S. Andalman, Tyler Benster, Megan E. Young, Clayton P. Mosher, Juri Minxha, Eugene Carter, Ueli Rutishauser, Peter H. Rudebeck, Christopher D. Harvey, Karl A. Deisseroth, Kanaka Rajan

This paper introduces CURBD, a method using data-constrained recurrent neural networks to infer brain-wide interactions from neural recordings across species.

Neuron · Aug 1, 2026Peer-reviewedNeuroscience

Multiple overlapping hypothalamus-brainstem circuits drive rapid threat avoidance

Matthew Lovett-Barron, Ritchie Chen, Susanna Bradbury, Aaron S. Andalman, Mahendra D. Wagle, Su Guo, Karl A. Deisseroth

The paper identifies hypothalamic circuits involved in rapid threat avoidance in zebrafish using neural activity imaging and gene expression analysis.

Nature Neuroscience · Jun 22, 2020Peer-reviewedNeuroscience

Identification Of Cellular-Activity Dynamics Across Large Tissue Volumes In The Mammalian Brain

Logan Grosenick, Michael Joseph Broxton, Christina K. Kim, Conor M. Liston, Ben Poole, Samuel Yang, Aaron S. Andalman, Edward Scharff, Noy Cohen, Ofer Yizhar, Charu Ramakrishnan, Surya Ganguli, Patrick Suppes, Marc Levoy, Karl A. Deisseroth

The paper introduces SWIFT, a computational imaging method for capturing coordinated neuronal activity across large tissue volumes in mammals at high speed and resolution.

bioRxiv · May 1, 2017 · PreprintNeuroscience