Author

Alex J. Tate

Colorado State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Organism:C. elegans· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Taiowa A. MontgomeryiD· 3 shared Anastasia S. Nawrocki· 1 shared Ashwin SeetharamaniD· 1 shared Brooke E. MontgomeryiD· 1 shared Elizabeth Linarte· 1 shared Ennis W. DeihliD· 1 shared Frédéric J. HoerndliiD· 1 shared Gary RuvkuniD· 1 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersGenomics

Taiowa A. MontgomeryORCID

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3 papers

Recent·Most cited

A low-abundance class of Dicer-dependent siRNAs produced from a variety of features in C. elegans

Thiago L. Knittel, Brooke E. Montgomery, Alex J. Tate, Ennis W. Deihl, Anastasia S. Nawrocki, Frédéric J. Hoerndli, Taiowa A. Montgomery

The paper identifies a new class of Dicer-dependent siRNAs in C. elegans, called 23H-RNAs, produced from diverse genomic features.

Genome Research · Dec 1, 2024Peer-reviewedGenomics

Caenorhabditis elegans SynMuv B gene activity is down-regulated during a viral infection to enhance RNA interference

Ashwin Seetharaman, Himani Galagali, Elizabeth Linarte, Mona H. X. Liu, Jennifer D. Cohen, Kashish Chetal, Ruslan I. Sadreyev, Alex J. Tate, Taiowa A. Montgomery, Gary Ruvkun

The paper shows that reduced synMuv B gene activity in C. elegans enhances RNA interference against viral infection.

bioRxiv · Jul 12, 2024 · PreprintGenetics

tinyRNA: precision analysis of small RNA-seq data with user-defined hierarchical selection rules

Alex J. Tate, Kristen C. Brown, Taiowa A. Montgomery

tinyRNA provides a flexible tool for analyzing small RNA-seq data with hierarchical selection rules and generates reproducible results.

Bioinformatics Advances · Jan 1, 2023Peer-reviewedBioinformatics