Author

An Nguyen

Aalto University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Plant Biology· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Agnieszka A. GolicziD· 1 shared Andreas Møllerhøj VestergaardiD· 1 shared Ao Ying· 1 shared Arun A. Chandrakumar· 1 shared Ben DoroniD· 1 shared Bradley A. StohriD· 1 shared C.K. Cornelia Ding· 1 shared Cecilie Boysen· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperPlant Biology

Agnieszka A. GoliczORCID

Author profile →

4 papers

Recent·Most cited

Adaptive evolution of engineered Saccharomyces cerevisiae in favored and unusual chemical environments

Natalia Kakko von Koch, An Nguyen, Olli Lohilahti, Andreas Møllerhøj Vestergaard, Ao Ying, Nea Virta, Päivi Vähäjärvi, Chunhao Gu, Ulla Moilanen, Tomas Strucko, Paula Jouhten

This study investigates how Darwinian selection affects engineered traits in yeast by evolving strains with pigment production pathways under different carbon sources.

Metabolic Engineering · Apr 2, 2026Peer-reviewedSynthetic Biology

Integrative epigenomic analysis uncovers asymmetry of enhancer activity in Brassica napus

Silvia F. Zanini, Kevin Rockenbach, An Nguyen, Kübra Arslan, Gözde Yildiz, Rod John Snowdon, Agnieszka A. Golicz

The paper identifies and characterizes super-enhancers in Brassica napus, revealing their asymmetrical distribution and functional impact on gene expression and regulatory processes.

bioRxiv · Oct 31, 2025 · PreprintPlant Biology

Reconstructing tumor evolution without chromosomal instability reveals in vivo determinants of therapeutic response

Ruhollah Moussavi-Baygi, Matthew J. Ryan, Woogwang Sim, Samuel B Hoelscher, Valbona Luga, Arun A. Chandrakumar, Lore Hoes, Junghwa Cha, Young Sun Lee, Katelyn Herm, Ben Doron, Danika Bakke, Sharon Wu, C.K. Cornelia Ding, Bradley A. Stohr, , Rohit Bose

This study develops an in vivo platform called SETs to reconstruct tumor evolution without chromosomal instability, identifying therapeutic response determinants in prostate cancer.

bioRxiv · Mar 17, 2025 · PreprintCancer Biology

BBrowser: Making single-cell data easily accessible

Tri Le, Tan Phan, Minh Pham, Dat Tran, Loc Lam, Ngoc Tung Nguyen, Thao Truong, Hy Vuong, Tam Luu, Nam Phung, Ngan Pham, Trang Thi Thu Nguyen, Oanh Minh Pham, An Nguyen, Huy Tan Nguyen, , Son Truong Pham

A downloadable application pairs a curated single-cell database with a big-data analytics layer and a visualisation module for exploring single-cell omics data.

bioRxiv · Dec 11, 2020 · PreprintBioinformatics