Author

Andrew Cheng

Rutgers, The State University of New JerseyPrimary ORCID profile (0009-0002-6570-7667 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Andrew ChengiD1 paper · Johns Hopkins University

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:protein sequence· 1

Frequent Co-Authors

Danny WaniD· 2 shared Huizhou FaniD· 2 shared Arkaprabha Ghatak· 1 shared Chen YangiD· 1 shared Chengyuan WangiD· 1 shared Deming LiiD· 1 shared Deyu Feng· 1 shared Edward Nelson· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

Danny WanORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Distinguishing Photoacoustic and Photothermal Neuron Stimulation Through Quantitative Mapping Spatiotemporal Field Evolution

Deming Li, Andrew Cheng, Xinrui Gong, Haoxin Huang, Yueming Li, Yifan Zhu, Edward Nelson, Ji‐Xin Cheng, Guo Chen, Chen Yang

This paper distinguishes photoacoustic and photothermal neuron stimulation by mapping their spatiotemporal field evolution, finding neurons are more responsive to photoacoustic stimulation.

bioRxiv · Jun 15, 2026 · PreprintNeuroscience

Analyzing RNA-Seq Data from Chlamydia with Super Broad Transcriptomic Activation: Challenges, Solutions, and Implications for Other Systems

Danny Wan, Andrew Cheng, Yuxuan Wang, Guangming Zhong, Wei Vivian Li, Huizhou Fan

The paper addresses challenges in differential expression analysis of Chlamydia RNA-Seq data by proposing normalization methods that better capture transcriptomic activation, validated through qRT-PCR.

BMC Genomics · Aug 25, 2024Peer-reviewedBioinformatics

Identification and structural modeling of the chlamydial RNA polymerase omega subunit

Andrew Cheng, Danny Wan, Arkaprabha Ghatak, Chengyuan Wang, Deyu Feng, Joseph D. Fondell, Richard H. Ebright, Huizhou Fan

The paper identifies CTL0286 as the chlamydial RNA polymerase omega subunit and shows it is conserved across obligate intracellular bacteria.

bioRxiv · Sep 22, 2022 · PreprintMolecular Biology