Author

Andrew Holmes

Birmingham Research Park

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Genetics· 1 Microbiology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:electronic health records· 1 Assay:metagenomics· 1 Organism:mouse· 1 Organism:non-human primate· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam Paul RobertsiD· 1 shared Alexander D. H. KingdoniD· 1 shared Amanda J Chunco· 1 shared Amber Cutcliffe· 1 shared Amy McLemaniD· 1 shared Andrew Parker MorganiD· 1 shared Angus M. O’FerralliD· 1 shared Anna K Lindholm· 1 shared

Activity by Year

2016-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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1 shared paperMicrobiology

Adam Paul RobertsORCID

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Author profile →

3 papers

Recent·Most cited

A citywide metagenomic analysis reveals surface-specific microbiome and resistome patterns in outdoor urban environments across Liverpool, UK.

Gavin Ackers-Johnson, Angus M. O’Ferrall, Andrew Holmes, Ellie Allman, Pauline Ambrose, Anya Breen, Amber Cutcliffe, Kara D’Arcy, Richard N. Goodman, Alexander D. H. Kingdon, Amy McLeman, Sabrina John Moyo, Ralfh Pulmones, Moon Deb Rajib, Priyanka Sharma, , Adam Paul Roberts

The paper uses shotgun metagenomic sequencing to analyze microbial communities and antimicrobial resistance genes across five urban surface types in Liverpool, finding distinct microbial and resistance profiles with higher ARG abundance on frequently contacted surfaces.

bioRxiv · Oct 8, 2026 · PreprintMicrobiology

Volumetric mesoscopic electrophysiology: a new imaging modality for the non-human primate

Tobias Teichert, László Papp, Ferenc Vincze, Nioka Burns, Baldwin Goodell, Zabir Ahmed, Andrew Holmes, Charles Montgomery Gray, Maysamreza Chamanzar, Kate Gurnsey

The paper introduces a new mesoscopic electrophysiology method for non-human primates, demonstrating its ability to record large-scale brain activity and show functional disconnection under ketamine.

Journal of Neurophysiology · Feb 27, 2025Peer-reviewedNeuroscience

R2d2 drives selfish sweeps in the house mouse

John P Didion, Andrew Parker Morgan, Liran Yadgary, Timothy A Bell, Rachel Clara McMullan, Lydia Ortiz de Solorzano, Janice Britton-Davidian, Carol J Bult, Karl J Campbell, Riccardo Castiglia, Yung-Hao Ching, Amanda J Chunco, James J Crowley, Elissa J Chesler, John E French, , Stephan P Ross

The paper shows R2d2HC alleles drive selfish sweeps in house mice, increasing in frequency faster than genetic drift and reducing litter sizes in heterozygous mothers.

Molecular Biology and Evolution · Feb 15, 2016Peer-reviewedGenetics