Author

Aris Taychameekiatchai

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Assay:scRNA-seq· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Angela Oliveira PiscoiD· 2 shared Bruce WangiD· 2 shared Abhishek MurtiiD· 1 shared Alkes L. PriceiD· 1 shared Ashley ByrneiD· 1 shared Bogdan PaşaniuciD· 1 shared George EmanueliD· 1 shared James ZouiD· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Angela Oliveira PiscoORCID

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2 papers

Recent·Most cited

Concordance of MERFISH Spatial Transcriptomics with Bulk and Single-cell RNA Sequencing

Jonathan Liu, Vanessa Tran, Venkata N. P. Vemuri, Ashley Byrne, Michael Borja, Yang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, Abhishek Murti, Aris Taychameekiatchai, Bruce Wang, George Emanuel, Jiang He, John R. Haliburton, , Norma F Neff

The paper compares MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing in mouse liver and kidney, finding MERFISH provides comparable results and robust cell type identification without needing integration with scRNA-seq atlases.

Life Science Alliance · Dec 16, 2022Peer-reviewedBioinformatics

Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data

Martin Jinye Zhang, Kangcheng Hou, Kushal K. Dey, Saori Sakaue, Karthik A. Jagadeesh, Kathryn Weinand, Aris Taychameekiatchai, Poorvi Rao, Angela Oliveira Pisco, James Zou, Bruce Wang, Michael J. Gandal, Soumya Raychaudhuri, Bogdan Paşaniuc, Alkes L. Price

This paper introduces scDRS, a method to identify disease-associated cells in scRNA-seq data using polygenic risk scores, finding novel subpopulations linked to diseases like IBD and schizophrenia.

Nature Genetics · Sep 1, 2022Peer-reviewedBioinformatics