Author

Vanessa Tran

Chan Zuckerberg Biohub San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:mouse· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Angela Oliveira PiscoiD· 2 shared Michael BorjaiD· 2 shared Norma F NeffiD· 2 shared Aaron McGeeveriD· 1 shared Abhishek MurtiiD· 1 shared Alejandro A. GranadosiD· 1 shared Andrea Álvarez-VázqueziD· 1 shared Angela M. DetweileriD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersNeuroscience

Angela Oliveira PiscoORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Single-nucleus RNA sequencing provides insights into the GL261-GSC syngeneic mouse model of glioblastoma

Laura García-Vicente, Michael Borja, Vanessa Tran, Andrea Álvarez-Vázquez, Raquel Flores-Hernández, Alejandro A. Granados, Aaron McGeever, Yang-Joon Kim, Leah C. Dorman, Angela M. Detweiler, Honey E. Mekonen, Sheryl Paul, Angela Oliveira Pisco, Norma F Neff, Arantxa Tabernero

This study uses single-nucleus RNA sequencing to analyze a mouse glioblastoma model, identifying potential therapeutic targets and similarities with human GBM subtypes.

bioRxiv · Oct 26, 2023 · PreprintNeuroscience

Concordance of MERFISH Spatial Transcriptomics with Bulk and Single-cell RNA Sequencing

Jonathan Liu, Vanessa Tran, Venkata N. P. Vemuri, Ashley Byrne, Michael Borja, Yang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, Abhishek Murti, Aris Taychameekiatchai, Bruce Wang, George Emanuel, Jiang He, John R. Haliburton, , Norma F Neff

The paper compares MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing in mouse liver and kidney, finding MERFISH provides comparable results and robust cell type identification without needing integration with scRNA-seq atlases.

Life Science Alliance · Dec 16, 2022Peer-reviewedBioinformatics