Author

John R. Haliburton

Chan Zuckerberg Biohub San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Abhishek MurtiiD· 1 shared Angela Oliveira PiscoiD· 1 shared Aris Taychameekiatchai· 1 shared Ashley ByrneiD· 1 shared Bruce WangiD· 1 shared Emeric J. CharlesiD· 1 shared Flavia PichiorriiD· 1 shared George EmanueliD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Abhishek MurtiORCID

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2 papers

Recent·Most cited

Concordance of MERFISH Spatial Transcriptomics with Bulk and Single-cell RNA Sequencing

Jonathan Liu, Vanessa Tran, Venkata N. P. Vemuri, Ashley Byrne, Michael Borja, Yang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, Abhishek Murti, Aris Taychameekiatchai, Bruce Wang, George Emanuel, Jiang He, John R. Haliburton, , Norma F Neff

The paper compares MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing in mouse liver and kidney, finding MERFISH provides comparable results and robust cell type identification without needing integration with scRNA-seq atlases.

Life Science Alliance · Dec 16, 2022Peer-reviewedBioinformatics

Dissecting heterogeneous cell-populations across drug and disease conditions with PopAlign

Sisi Chen, Paul Rivaud, Jong‐Hwan Park, Tiffany Tsou, Emeric J. Charles, John R. Haliburton, Flavia Pichiorri, Matt W. Thomson

PopAlign identifies subpopulations and tracks gene expression changes in heterogeneous cell mixtures across drug and disease conditions.

Proceedings of the National Academy of Sciences · Oct 30, 2020Peer-reviewedBioinformatics