Author

Arthur Liberzon

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Aravind SubramanianiD· 2 shared Bang Wong· 2 shared Jesse S. BoehmiD· 2 shared Rajiv Narayan· 2 shared Ted Natoli· 2 shared Alice H. BergeriD· 1 shared Alykhan F. Shamji· 1 shared Andrew A. TubelliiD· 1 shared

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2 shared papersGenomics

Aravind SubramanianORCID

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3 papers

Recent·Most cited

GeNets: A unified web platform for network-based analyses of genomic data

Taibo Li, April Kim, Joseph Rosenbluh, Heiko Horn, Liraz Greenfeld, David An, Andrew R. Zimmer, Arthur Liberzon, Jon Bistline, Ted Natoli, Yang Li, Aviad Tsherniak, Rajiv Narayan, Aravind Subramanian, Ted Liefeld, , Kasper Lage

GeNets provides a platform to compare genomic networks using machine learning and allows analysis of genetic and RNA sequencing data.

Nature Methods · Jun 15, 2018Peer-reviewedGenomics

A Next Generation Connectivity Map: L1000 Platform And The First 1,000,000 Profiles

Aravind Subramanian, Rajiv Narayan, Steven M. Corsello, David D. Peck, Ted Natoli, Xiaodong Lü, Joshua Gould, John F. Davis, Andrew A. Tubelli, Jacob K. Asiedu, David L. Lahr, Jodi Hirschman, Zihan Liu, Melanie K. Donahue, Bina Julian, , Todd R. Golub

The paper introduces the L1000 platform, a high-throughput gene expression profiling method, and reports 1.3 million perturbational profiles expanding the Connectivity Map for drug mechanism discovery and functional annotation.

Cell · Nov 1, 2017Peer-reviewedGenomics

GSKB: A gene set database for pathway analysis in mouse

Liming Lai, Jason Hennessey, Valerie Bares, Eun Son, Yuguang J. Ban, Wei Wang, Jianli Qi, Gaixin Jiang, Arthur Liberzon, Xijin Ge

The paper creates a gene set database for pathway analysis in mouse, enabling pathway analysis and meta-analysis of gene expression signatures.

bioRxiv · Oct 24, 2016 · PreprintBioinformatics