Author

B. J. Sanderson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4 Cancer Biology· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Research Focus:cell type annotation· 3 Organism:Arabidopsis· 2 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Research Focus:phylogenetics / evolution· 2 Assay:whole-genome sequencing· 2

Frequent Co-Authors

A. Srivastava· 3 shared M. W. Lloyd· 3 shared C. G. Oakley· 2 shared C. J. Bult· 2 shared J. H. Chuang· 2 shared P. Lott· 2 shared PDXNet Consortium· 2 shared T. Ma· 2 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersCancer Biology

A. Srivastava

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Author profile →

7 papers

Recent·Most cited

A large effect fitness trade-off across environments is explained by a single mutation affecting cold acclimation

G. Lee, B. J. Sanderson, T. J. Ellis, B. P. Dilkes, J. K. McKay, J. Agren, C. G. Oakley

This study identifies a single mutation in CBF2 that causes a fitness trade-off by affecting cold acclimation in Arabidopsis thaliana across environments.

bioRxiv · Sep 11, 2023Evolutionary Biology

Phylogenomics reveals patterns of ancient hybridization and differential diversification contributing to phylogenetic conflict in Populus L. and Salix L.

B. J. Sanderson, D. Ghambir, G. Feng, N. Hu, Q. C. Cronk, D. M. Percy, F. M. Freaner, M. G. Johnson, L. B. Smart, K. Keefover-Ring, T. Yin, T. Ma, S. P. DiFazio, J. Liu, M. S. Olson

This study uses phylogenomic analysis to identify ancient hybridization and differential diversification as sources of phylogenetic conflict in Populus and Salix.

bioRxiv · Jan 4, 2023 · PreprintEvolutionary Biology

Development and application of genetic ancestry reconstruction methods to study diversity of patient-derived models in the NCI PDXNet Consortium

B. J. Sanderson, P. Lott, K. Chiu, J. E. Quino, A. P. Vang, M. W. Lloyd, A. Srivastava, PDXNet Consortium, J. H. Chuang, L. G. Carvajal-Carmona

The paper develops a genetic ancestry pipeline to assess diversity in PDX models and finds overrepresentation of European ancestry models, highlighting gaps in minority representation for cancer research.

bioRxiv · Oct 24, 2022 · PreprintCancer Biology

A Genomically and Clinically Annotated Patient Derived Xenograft (PDX) Resource for Preclinical Research in Non-Small Cell Lung Cancer

X. Y. Woo, A. Srivastava, P. C. Mack, J. H. Graber, B. J. Sanderson, M. W. Lloyd, M. Chen, S. Domanskyi, R. Gandour-Edwards, R. A. Tsai, J. Keck, M. Cheng, M. Bundy, E. L. Jocoy, J. W. Riess, , C. J. Bult

The paper describes a collection of 79 genomically and clinically annotated lung cancer PDX models that retain patient tumor features and treatment responses, available through MMHCdb.

bioRxiv · Mar 6, 2022Cancer Biology

PDXNet Portal: Patient-Derived Xenograft model, data, workflow, and tool discovery

S. Koc, M. W. Lloyd, J. Grover, S. Seepo, S. Lakshmi Subramanian, M. Ray, C. Frech, J. DiGiovanna, P. Webster, S. Neuhauser, A. Srivastava, X. Yi Woo, B. J. Sanderson, B. White, P. Lott, , J. H. Chuang

The paper introduces the PDXNet Portal, a centralized resource for PDX models and data, offering analysis workflows and facilitating cancer research collaboration.

bioRxiv · Oct 15, 2021Cancer Biology

Targeted sequence capture array for phylogenetics and population genomics in the Salicaceae

B. J. Sanderson, S. DiFazio, Q. Cronk, T. Ma, M. Olson

The paper develops a targeted sequence capture array for phylogenetics and population genomics in the Salicaceae family, showing high capture efficiency and utility for species tree reconstruction and population genomic analysis.

bioRxiv · May 8, 2020Evolutionary Biology

Genetic and physiological mechanisms of freezing tolerance in locally adapted populations of a winter annual

B. J. Sanderson, S. Park, M. I. Jameel, J. C. Kraft, M. F. Thomashow, D. W. Schemske, C. G. Oakley

The paper investigates freezing tolerance differences between Swedish and Italian Arabidopsis thaliana ecotypes by analyzing CBF2 LOF mutations and their gene expression effects.

bioRxiv · May 17, 2019Evolutionary Biology