Author

Beate Kaufmann

Technion – Israel Institute of Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Synthetic Biology· 4

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:DNA methylation· 2 Organism:E. coli· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Roee AmitiD· 4 shared Noa KatziD· 3 shared Orna AtariD· 3 shared Oz SolomoniD· 3 shared Sarah GoldbergiD· 3 shared Zohar Yakhini BiD· 3 shared Noa Eden· 2 shared Roni CoheniD· 2 shared

Activity by Year

2017-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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4 shared papersSynthetic Biology

Roee AmitORCID

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4 papers

Recent·Most cited

Identifying triplex binding rules in vitro leads to creation of a new synthetic regulatory tool in vivo

Beate Kaufmann, Or Willinger, Noa Eden, Lisa Kermas, Leon Anavy, Oz Solomon, Orna Atar, Zohar Yakhini B, Sarah Goldberg, Roee Amit

The paper develops a deep-sequencing platform to refine DNA triplex binding rules and creates a synthetic regulatory tool for in vivo applications.

bioRxiv · Dec 25, 2019 · PreprintSynthetic Biology

Synthetic 5 UTRs can either up- or down-regulate expression upon RBP binding

Noa Katz, Roni Cohen, Oz Solomon, Beate Kaufmann, Orna Atar, Zohar Yakhini B, Sarah Goldberg, Roee Amit

The paper shows that synthetic 5 UTRs can be up- or down-regulated by RBP binding, revealing RNA-RBP interactions that control translation.

bioRxiv · Mar 28, 2019 · PreprintSynthetic Biology

An in vivo binding assay for RNA-binding proteins based on repression of a reporter gene

Noa Katz, Roni Cohen, Oz Solomon, Beate Kaufmann, Noa Eden, Orna Atar, Zohar Yakhini B, Sarah Goldberg, Roee Amit

The paper develops an in vivo method to quantify RNA-binding protein-RNA interactions using a reporter gene repression assay and SHAPE-seq in bacteria.

ACS Synthetic Biology · Nov 8, 2018Peer-reviewedSynthetic Biology

Demonstration of de novo chemotaxis in E. coli using a real-time, quantitative, and digital-like approach

Tzila Davidov, Naor Granik, Sharbel Zahran, Inbal Adir, Ofek Elul, Tal Fried, Asif Gil, Bar Mayo, Shilo Ohayon, Shiran Sarig, Nofar Shasha, Shirane Tsedef, Shani Weiner, Michal Brunwasser-Meirom, Alexandra Ereskovsky, , Roee Amit

The paper demonstrates a synthetic chemoreceptor in E. coli for histamine using computational design and a novel quantitative assay to characterize chemotaxis.

bioRxiv · Mar 6, 2017 · PreprintSynthetic Biology