Author

Ben A. Calvert

University of Iowa

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Amy L. RyaniD· 2 shared Crystal N. MarconettiD· 2 shared Aaron Neely· 1 shared Adrian M. Caceres· 1 shared Alessandra CastaldiiD· 1 shared Angela MeieriD· 1 shared Asres Berhan· 1 shared Beiyun ZhouiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersCell Biology

Amy L. RyanORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Culture Conditions Differentially Regulate the Inflammatory Niche and Cellular Phenotype of Tracheo-Bronchial Basal Stem Cells

Shubha Murthy, Denise A. Seabold, Lalit Kumar Gautam, Adrian M. Caceres, Rosemary Sease, Ben A. Calvert, Shana M. Busch, Aaron Neely, Crystal N. Marconett, Amy L. Ryan

This study shows that different culture media significantly alter the inflammatory phenotype and functional properties of human tracheo-bronchial basal stem cells.

American Journal of Physiology-Lung Cellular and Molecular Physiology · Feb 21, 2025Peer-reviewedCell Biology

Integrated multiomic analysis identifies TRIP13 as a mediator of alveolar epithelial type II cell dysfunction in idiopathic pulmonary fibrosis

Laurence St. Pierre, Asres Berhan, Eun Kyu Sung, Juan R. Alvarez, Hongjun Wang, Yanbin Ji, Yixin Liu, Haoze Vincent Yu, Angela Meier, Kamyar Afshar, Eugene M. Golts, Grace Lin, Alessandra Castaldi, Ben A. Calvert, Amy L. Ryan, , Zea Borok

The paper identifies TRIP13 as a mediator of AT2 cell dysfunction in IPF through integrated transcriptomic and epigenomic analysis and shows TRIP13 inhibition prevents mesenchymal gene signature acquisition.

bioRxiv · Apr 5, 2024 · PreprintBioinformatics