Author

Haoze Vincent Yu

University of Southern CaliforniaORCID 0000-0002-3831-2291Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:zebrafish· 2 Organism:bacteria (other)· 1

Frequent Co-Authors

Justin Gage CrumpiD· 2 shared Pengfei XuiD· 2 shared Péter FábiániD· 2 shared Alessandra CastaldiiD· 1 shared Amy L. RyaniD· 1 shared Angela MeieriD· 1 shared Asres Berhan· 1 shared Beiyun ZhouiD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMolecular Biology

Justin Gage CrumpORCID

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3 papers

Recent·Most cited

Integrated multiomic analysis identifies TRIP13 as a mediator of alveolar epithelial type II cell dysfunction in idiopathic pulmonary fibrosis

Laurence St. Pierre, Asres Berhan, Eun Kyu Sung, Juan R. Alvarez, Hongjun Wang, Yanbin Ji, Yixin Liu, Haoze Vincent Yu, Angela Meier, Kamyar Afshar, Eugene M. Golts, Grace Lin, Alessandra Castaldi, Ben A. Calvert, Amy L. Ryan, , Zea Borok

The paper identifies TRIP13 as a mediator of AT2 cell dysfunction in IPF through integrated transcriptomic and epigenomic analysis and shows TRIP13 inhibition prevents mesenchymal gene signature acquisition.

bioRxiv · Apr 5, 2024 · PreprintBioinformatics

Foxc1 establishes enhancer accessibility for craniofacial cartilage differentiation

Pengfei Xu, Haoze Vincent Yu, Kuo-Chang Tseng, Mackenzie Flath, Péter Fábián, Neil Segil, Justin Gage Crump

The paper identifies Foxc1's role in establishing chromatin accessibility for facial cartilage enhancers during zebrafish development.

eLife · Jan 27, 2021Peer-reviewedMolecular Biology

Evolution of vertebrate gill covers via shifts in an ancient Pou3f3 enhancer

Lindsey A. Barske, Péter Fábián, Christine Hirschberger, Dávid Jandzík, Tyler A. Square, Pengfei Xu, Nellie E. Nelson, Haoze Vincent Yu, Daniel Meulemans Medeiros, J. Andrew Gillis, Justin Gage Crump

The paper identifies a conserved Pou3f3 enhancer that drives divergent gill cover patterns in jawed vertebrates by regulating pharyngeal arch expression.

Proceedings of the National Academy of Sciences · Sep 21, 2020Peer-reviewedDevelopmental Biology