Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
10 papers
Recent·Most cited
E. E. Ellison, P. Zhou, P. J. Hermanson, A. Read, Y.-H. Chu, C. N. Hirsch, E. Grotewold, N. M. Springer
The study identifies Mu transposon insertions in maize genes that create outward-reading promoters, leading to complex transcripts and gene expression patterns similar to wild-type.
bioRxiv · Jun 5, 2023 · PreprintPlant Biology
R. Della Coletta, S. E. Liese, S. B. Fernandes, M. A. Mikel, M. O. Bohn, A. E. Lipka, C. N. Hirsch
The paper introduces marker effect networks to identify genetic markers linked to environmental adaptability in plants, showing co-varying markers are biologically relevant and robust across analysis parameters.
bioRxiv · Jan 19, 2023 · PreprintPlant Biology
D. Kick, J. Wallace, J. C. Schnable, J. M. Kolkman, B. Alaca, T. M. Beissinger, D. Ertl, S. Flint-Garcia, J. L. Gage, C. N. Hirsch, J. E. Knoll, N. de Leon, D. C. Lima, D. Moreta, M. Singh, , J. D. Washburn
This study uses deep learning to predict maize yield by integrating genetic, environmental, and management data, finding that models incorporating interactions perform best.
bioRxiv · Jul 29, 2022Plant Biology
A. C. Read, T. Weiss, P. A. Crisp, Z. Liang, J. Noshay, C. C. Menard, C. Wang, M. Song, C. N. Hirsch, N. M. Springer, F. Zhang
This study examines the effects of losing RNA-directed DNA methylation in Setaria viridis by analyzing methylation patterns and gene expression in drm1ab mutants, finding limited morphological and transcriptional consequences.
bioRxiv · Jan 5, 2022Plant Biology
J. M. Noshay, Z. Liang, P. Zhou, P. A. Crisp, A. P. Marand, C. N. Hirsch, R. J. Schmitz, N. Springer
The paper assesses chromatin accessibility and DNA methylation in four structurally diverse maize genomes, revealing conservation of features with dynamic boundaries in unmethylated regions.
bioRxiv · Mar 10, 2021Plant Biology
S. B. Tirado, C. N. Hirsch, N. M. Springer
The paper uses UAV-collected temporal plant height data to assess root lodging in maize and its impact on yield, finding growth rates and storm exposure timing predict lodging severity.
bioRxiv · May 21, 2020Plant Biology
J. Noshay, A. P. Marand, S. N. Anderson, P. Zhou, M. K. Mejia Guerra, Z. Lu, C. O'Connor, P. A. Crisp, C. N. Hirsch, R. J. Schmitz, N. M. Springer
The paper identifies TE insertions that influence gene expression in maize by disrupting or carrying accessible chromatin regions, showing TEs can create novel regulatory elements.
bioRxiv · May 20, 2020 · PreprintPlant Biology
S. B. Tirado, C. N. Hirsch, N. M. Springer
This study evaluates UAV-based imaging for high-temporal-resolution maize height monitoring, comparing it to manual measurements and proposing methods to improve their correspondence.
bioRxiv · Oct 7, 2019Plant Biology
Z. Li, S. B. Tirado, D. C. Kadam, L. Coffey, N. D. Miller, E. P. Spalding, A. J. Lorenz, N. de Leon, S. M. Kaeppler, P. S. Schnable, N. M. Springer, C. N. Hirsch
This study examines how small genomic introgressions affect plant traits across different environments, finding significant allele-by-environment interactions in various growth stages.
bioRxiv · Aug 16, 2019 · PreprintPlant Biology
A. B. Brohammer, T. J. Y. Kono, N. M. Springer, S. E. McGaugh, C. N. Hirsch
The paper investigates differential fractionation in maize inbred lines and finds it contributes little to presence/absence variation and functional phenotypic differences.
bioRxiv · Aug 21, 2017Plant Biology