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4 papers
Recent·Most cited
H. Yan, J. P. Mendieta, X. Zhang, A. P. Marand, Y. Liang, Z. Luo, M. A. A. Minow, H. Jang, X. Li, T. Roule, D. Wagner, X. Tu, Y. Wang, D. Jiang, S. Zhong, , R. J. Schmitz
The paper constructs a single-cell chromatin accessibility atlas in rice and compares it across grass species to study the evolution of cell-type-specific cis-regulatory elements.
bioRxiv · Jan 8, 2024 · PreprintPlant Biology
M. Wang, S. Shilo, A. Zhou, M. Zelkowski, M. A. Olson, I. Azuri, N. Shoshani-Hechel, C. Melamed-Bessudo, A. P. Marand, J. Jiang, J. C. Schnable, C. J. Underwood, I. R. Henderson, Q. Sun, J. Pillardy, , W. P. Pawlowski
The paper uses machine learning to identify key chromatin features that determine meiotic recombination sites in plants, finding that three features can predict crossover sites with 90% accuracy.
bioRxiv · Jul 11, 2022 · PreprintPlant Biology
J. M. Noshay, Z. Liang, P. Zhou, P. A. Crisp, A. P. Marand, C. N. Hirsch, R. J. Schmitz, N. Springer
The paper assesses chromatin accessibility and DNA methylation in four structurally diverse maize genomes, revealing conservation of features with dynamic boundaries in unmethylated regions.
bioRxiv · Mar 10, 2021Plant Biology
J. Noshay, A. P. Marand, S. N. Anderson, P. Zhou, M. K. Mejia Guerra, Z. Lu, C. O'Connor, P. A. Crisp, C. N. Hirsch, R. J. Schmitz, N. M. Springer
The paper identifies TE insertions that influence gene expression in maize by disrupting or carrying accessible chromatin regions, showing TEs can create novel regulatory elements.
bioRxiv · May 20, 2020 · PreprintPlant Biology