Author

C. S. Carpenter

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Approach:comparative / phylogenetic analysis· 1 Research Focus:host-pathogen & immune response· 1 Organism:multiple species· 1

Frequent Co-Authors

R. Knight· 3 shared A. D. Swafford· 2 shared G. Humphrey· 2 shared J. P. Shaffer· 2 shared K. Sanders· 2 shared R. A. Salido· 2 shared A. O. Akinrinade· 1 shared B. L. Willis· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersMicrobiology

R. Knight

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Author profile →

3 papers

Recent·Most cited

Evidence for microbially-mediated tradeoffs between growth and defense throughout coral evolution

H. E. Epstein, T. Brown, A. O. Akinrinade, R. McMinds, F. J. Pollock, D. Sonett, S. Smith, D. G. Bourne, C. S. Carpenter, R. Knight, B. L. Willis, M. Medina, J. B. Lamb, R. V. Thurber, J. R. Zaneveld

This study shows that microbial symbionts, particularly Endozoicomonas, influence coral growth and disease susceptibility across 425 million years of evolution.

bioRxiv · Apr 26, 2023 · PreprintMicrobiology

A comparison of six DNA extraction protocols for 16S, ITS, and shotgun metagenomic sequencing of microbial communities

J. P. Shaffer, C. S. Carpenter, C. P. Martino, R. A. Salido, M. Bryant, K. Sanders, T. Schwartz, G. Humphrey, A. D. Swafford, R. Knight

The paper compares six DNA extraction protocols for 16S, ITS, and shotgun metagenomic sequencing, finding the MagMAX Microbiome kit performs best across multiple criteria.

bioRxiv · Mar 7, 2022Microbiology

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

J. P. Shaffer, C. Marotz, P. Belda-Ferre, C. Martino, S. Wandro, M. Estaki, R. A. Salido, C. S. Carpenter, L. S. Zaramela, J. J. Minich, M. B. Bryant, K. Sanders, S. Fraraccio, G. Ackermann, G. Humphrey, , R. Knight

The paper compares DNA/RNA extraction protocols for microbial community sequencing, finding one protocol equivalent or better than a standard DNA-only method for RNA-based organisms.

bioRxiv · Nov 13, 2020Ecology