Author

C. Marotz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Ecology· 2

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:ecology & biodiversity· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

G. Ackermann· 3 shared G. Humphrey· 3 shared R. A. Salido· 3 shared A. A. Aksenov· 2 shared A. Gonzalez· 2 shared C. Martino· 2 shared D. McDonald· 2 shared J. J. Minich· 2 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersEcology

G. Ackermann

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

A reproducible and tunable synthetic soil microbial community provides new insights into microbial ecology

J. Coker, K. Zhalnina, C. Marotz, D. Thiruppathy, M. Tjuanta, G. D'Elia, R. Hailu, T. Mahosky, M. Rowan, T. Northen, K. Zengler

This paper develops a stable, reproducible synthetic soil microbial community for studying plant-microbe interactions and demonstrates its viability after cryopreservation.

bioRxiv · May 19, 2022Microbiology

Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence

R. A. Salido, V. J. Cantu, A. E. Clark, S. L. Leibel, A. Foroughishafiei, A. Saha, A. Hakim, A. Nouri, A. L. Lastrella, A. Castro-Martinez, A. Plascencia, B. Kapadia, B. Xia, C. Ruiz, C. Marotz, , R. Knight

This study compares RT-qPCR signal intensity and persistence of heat-inactivated and infectious SARS-CoV-2 on different surfaces, showing similar decay patterns and enabling simplified environmental monitoring protocols.

bioRxiv · Jul 16, 2021 · PreprintMicrobiology

Multi-omics profiling of Earth's biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments

J. P. Shaffer, L.-F. Nothias, L. R. Thompson, S. G. Jon, R. A. Salido, S. P. Couvillion, A. D. Brejnrod, S. Huang, F. Lejzerowicz, N. Haiminen, H. L. Lutz, Q. Zhu, C. Martino, J. T. Morton, S. Karthikeyan, , St

The paper performs a multi-omics meta-analysis of microbial and metabolite data from diverse environments, revealing patterns of diversity and co-occurrence across biomes.

bioRxiv · Jun 4, 2021Ecology

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

J. P. Shaffer, C. Marotz, P. Belda-Ferre, C. Martino, S. Wandro, M. Estaki, R. A. Salido, C. S. Carpenter, L. S. Zaramela, J. J. Minich, M. B. Bryant, K. Sanders, S. Fraraccio, G. Ackermann, G. Humphrey, , R. Knight

The paper compares DNA/RNA extraction protocols for microbial community sequencing, finding one protocol equivalent or better than a standard DNA-only method for RNA-based organisms.

bioRxiv · Nov 13, 2020Ecology

American Gut: an Open Platform for Citizen-Science Microbiome Research

D. McDonald, E. R. Hyde, J. W. Debelius, J. T. Morton, A. Gonzalez, G. Ackermann, A. A. Aksenov, B. Behsaz, C. Brennan, Y. Chen, L. DeRight Goldasicha, P. C. Dorrestein, R. R. Dunn, A. K. Fahimipourg, J. Gaffney, , Rah

The paper uses citizen-science data to analyze human stool microbiomes, revealing new insights into microbial diversity, metabolome composition, and associations with diet and health.

bioRxiv · Mar 7, 2018Microbiology