Author

C. Shimizu

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Research Focus:differential expression· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Assay:imaging· 1

Frequent Co-Authors

J. C. Burns· 2 shared A. Bodansky· 1 shared A. F. Kung· 1 shared A. H. Tremoulet· 1 shared A. Mitchell· 1 shared A. Tremoulet· 1 shared A. Y. Chan· 1 shared B. Miao· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersImmunology

J. C. Burns

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Author profile →

3 papers

Recent·Most cited

Bioorthogonal chemical labelling of endogenous neurotransmitter receptors in living mouse brains

H. Nonaka, S. Sakamoto, K. Shiraiwa, M. Ishikawa, T. Tamura, K. Okuno, S. Kiyonaka, E. A. Susaki, C. Shimizu, H. R. Ueda, W. Kakegawa, I. Arai, M. Yuzaki, I. Hamachi

This paper develops a method to label endogenous neurotransmitter receptors in living mouse brains using LDAI chemistry, enabling spatial mapping and dynamic analysis of receptors in health and disease.

bioRxiv · Jan 16, 2023 · PreprintBiochemistry

Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq

S. E. Vazquez, S. A. Mann, A. Bodansky, A. F. Kung, Z. Quandt, E. M. N. Ferre, N. Landegren, D. Eriksson, P. Bastard, S.-Y. Zhang, J. Liu, A. Mitchell, C. Mandel-Brehm, B. Miao, G. Sowa, , J. L. DeRisi

This paper scales PhIP-Seq for autoantibody discovery across multiple autoimmune diseases and COVID19, enabling machine learning predictions and identification of disease-specific autoantigens.

bioRxiv · Mar 23, 2022Immunology

An AI-guided signature reveals the nature of the shared proximal pathways of host immune response in MIS-C and Kawasaki disease

D. Sahoo, G. Dattatray, C. Shimizu, J. Kim, S. Khandelwal, A. H. Tremoulet, J. Kanegaye, Pediatric Emergency Medicine Kawasaki Disease Research Group, J. Bocchini, S. Das, J. C. Burns, P. Ghosh

The paper identifies shared and divergent immune pathways in MIS-C and Kawasaki disease using gene signatures and clinical data.

bioRxiv · Apr 11, 2021 · PreprintImmunology