Author

Charles Y Chiu

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Assay:metagenomics· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Scot FedermaniD· 3 shared Doug Stryke· 2 shared Guixia Yu· 2 shared Jerome Bouquet· 2 shared Samia N Naccache· 2 shared Sneha Somasekar· 2 shared Aaron S Burton· 1 shared Alex L Greninger· 1 shared

Activity by Year

2015-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersGenomics

Scot FedermanORCID

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3 papers

Recent·Most cited

Nanopore DNA Sequencing and Genome Assembly on the International Space Station

Sarah L Castro-Wallace, Charles Y Chiu, Kristen K John, Sarah E Stahl, Kathleen H Rubins, Alexa B. R. McIntyre, Jason P Dworkin, Mark L Lupisella, David J Smith, Douglas J Botkin, Timothy A Stephenson, Sissel Juul, Daniel J Turner, Fernando Izquierdo, Scot Federman, , Aaron S Burton

This study evaluates nanopore sequencing performance on the ISS, showing no performance decrease and successful genome assembly of bacterial and mammalian samples.

bioRxiv · Sep 27, 2016Genomics

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the critical need for reference strain sequencing

Alexander L Greninger, Kevin Messacar, Thelma Dunnebacke-Dixon, Samia N Naccache, Scot Federman, Jerome Bouquet, David Mirsky, Yosuke Nomura, Shigeo Yagi, Carol Glaser, Michael Vollmer, Craig A. Press, Bette K Klenschmidt-DeMasters, Samuel R Dominguez, Charles Y Chiu

The paper reports the first draft genome assembly of Balamuthia mandrillaris from a PAM survivor and highlights the need for reference genomes in metagenomic diagnosis.

Genome Medicine · Dec 1, 2015Peer-reviewedGenomics

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

Alex L Greninger, Samia N Naccache, Scot Federman, Guixia Yu, Placide Mbala, Vanessa Bres, Jerome Bouquet, Doug Stryke, Sneha Somasekar, Jeffrey Linnen, Roger Dodd, Prime Mulembakani, Bradley Schneider, Jean-Jacques Muyembe, Susan Stramer, Charles Y Chiu

This study uses real-time nanopore sequencing and a new pipeline to rapidly detect viral pathogens in clinical samples with high accuracy.

Genome Medicine · Sep 29, 2015Peer-reviewedGenomics