Author

Cunyu Wang

Peking University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:clustering· 3 Organism:human· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Research Focus:cell-cell communication· 2 Assay:spatial transcriptomics· 2 Approach:transformer / foundation model· 2 Approach:deep learning· 1

Frequent Co-Authors

Haorui ZhangiD· 2 shared Jiahao MaiD· 2 shared Peng Zhang· 2 shared Zexian ZengiD· 2 shared Zhihua LiuiD· 2 shared Zongxu ZhangiD· 2 shared Anthony CheniD· 1 shared Baige Zeng· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersBioinformatics

Haorui ZhangORCID

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Author profile →

3 papers

Recent·Most cited

A multimodal foundation model to integrate histology with spatial molecular programs

Zongxu Zhang, Bowen Qin, Yu Zhao, Zekun Qi, HJ Xu, Yunfeng Wang, Wenjin Zheng, Jiateng Dai, Anthony Chen, Hongtao Wang, Lanxi Nie, Peng Zhang, Haorui Zhang, Tian Xu, Siyu Lin, , Zexian Zeng

SQUALL integrates histology and spatial transcriptomics to enable virtual spatial gene expression profiling and clinical prediction across cancers and platforms.

bioRxiv · Oct 13, 2026 · PreprintBioinformatics

In situ Discovery of Immune Repertoire Reveals Antitumor Immunity and Therapeutic Antibodies

Haorui Zhang, Peiyu Wang, Yahui Zhao, Lukai Yang, Teng Xue, Li Liu, Yanping Zhao, Zongxu Zhang, Jiahao Ma, Baige Zeng, Peng Zhang, Cunyu Wang, Deng Pan, Zhidong Gao, Zhihua Liu, Zexian Zeng

This paper introduces Archimap, a spatial transcriptomic platform that profiles immune repertoires and microbiota in FFPE tissues, revealing antitumor immunity and therapeutic antibodies.

bioRxiv · Aug 19, 2026 · PreprintBioinformatics

Multiscale transcriptomic organization of the human brain with DigitalBrain

Jiangliang An, Xiangyang Hu, Y Jiang, Mingyu Jiang, Shuowen Qiu, Guole Liu, Xunbin Wei, Yuxing Wang, Julie Qiaojin Lin, Cunyu Wang, Ming Lu

DigitalBrain integrates and organizes human brain transcriptomic data across scales, revealing hierarchical organization and age-related gene reorganization.

bioRxiv · Apr 16, 2026 · PreprintBioinformatics