Author

D. B. T. Cox

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

A. Bakulin· 1 shared A. Smargon· 1 shared A. Zinkevich· 1 shared C. Choe· 1 shared C. Henkel· 1 shared D. Jang· 1 shared D. Krstevski· 1 shared D. Penzar· 1 shared

Activity by Year

2016-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBiophysics

A. Bakulin

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2 papers

Recent·Most cited

Ribonanza: deep learning of RNA structure through dual crowdsourcing

S. He, R. Huang, J. Townley, R. C. Kretsch, T. G. Karagianes, D. B. T. Cox, H. Blair, D. Penzar, V. Vyaltsev, E. Aristova, A. Zinkevich, A. Bakulin, H. Sohn, D. Krstevski, T. Fukui, , R. Das

The paper introduces RibonanzaNet, a deep learning model trained on crowdsourced RNA chemical mapping data to predict RNA structure and related properties.

bioRxiv · Feb 24, 2024 · PreprintBiophysics

Cas13b is a Type VI-B CRISPR-associated RNA-Guided RNase differentially regulated by accessory proteins Csx27 and Csx28

A. Smargon, D. B. T. Cox, N. Pyzocha, K. Zheng, I. M. Slaymaker, J. S. Gootenberg, O. A. Abudayyeh, P. Essletzbichler, S. Shmakov, K. S. Makarova, E. V. Koonin, F. Zhang

The paper identifies two CRISPR-Cas VI-B systems with Cas13b and characterizes their RNA interference activity and regulation by Csx27 and Csx28.

bioRxiv · Dec 9, 2016Microbiology