Author

D. Bandyopadhyay

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 2 Biophysics· 2 Cancer Biology· 1 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Organism:human· 4 Research Focus:cell signaling & trafficking· 3 Research Focus:protein folding & dynamics· 3 Assay:bulk RNA-seq· 2 Research Focus:metabolism & bioenergetics· 2 Assay:protein structure· 2 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

P. P. Mishra· 2 shared A. Arsenault· 1 shared A. Das· 1 shared A. KV· 1 shared A. M. Jecrois· 1 shared A. Sharaf· 1 shared A. Unterman· 1 shared A. Zhao· 1 shared

Activity by Year

2020-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 5 mutual co-author links

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2 shared papersBiophysics

P. P. Mishra

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7 papers

Recent·Most cited

ImmunologybioRxivOct 7, 2023

Mast-Cell Expressed Membrane Protein-1 (MCEMP1) is expressed in classical monocytes and alveolar macrophages in Idiopathic Pulmonary Fibrosis and regulates cell chemotaxis, adhesion, and migration in a TGFβ dependent manner.

C. Y. Perrot, T. Karampitsakos, A. Unterman…·J. D. Herazo-Maya

This study identifies MCEMP1 as highly expressed in monocytes and macrophages in IPF, regulated by TGFβ and involved in chemotaxis, adhesion, and migration through RHO GTPase modulation.

DOI 10.1152/ajpcell.00563.2023

humanbulk RNA-seq

𝕏 PostBluesky

BiochemistrybioRxivPreprintAug 26, 2022

Structural analysis unravels the functional promiscuity of Quinolone synthase-mediated polyketide biosynthesis in Aegle marmelos Correa

M. Vijayanathan, A. KV, D. Bandyopadhyay…·E. Soniya

This study analyzes the structural and functional properties of AmQNS, revealing its substrate selectivity and synthetic versatility for quinolone and acridone compounds.

DOI 10.1101/2022.08.26.505429

plant (other)protein structure

𝕏 PostBluesky

BiophysicsbioRxivPreprintDec 10, 2021

Single Molecule Analysis of differential functional mechanisms of MtRecG while being exposed to variants of stalled replication-fork

D. Bandyopadhyay, P. P. Mishra

This study uses single-molecule techniques to analyze how RecG unwinds stalled replication forks and facilitates Holliday junction formation through asymmetric locomotion.

DOI 10.1101/2021.12.10.472094

experimental assaycell signaling & trafficking

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MicrobiologybioRxivJul 1, 2021

Improved Metabolite Prediction Using Microbiome Data-Based Elastic Net Models

J. Xie, H. Cho, B. M. Lin…·D. Wu

The paper develops ENVIM, an Elastic Net Model-based method for predicting metabolites from microbiome data, showing improved accuracy over existing methods in oral, gut, and vaginal microbiome datasets.

DOI 10.3389/fcimb.2021.734416

humanmetagenomics

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Cancer BiologybioRxivJan 4, 2021

Inhibition of Extracellular Vesicle-Associated MMP2 Abrogates Intercellular Transfer of Hepatic miR-122 to Tissue Macrophages and Curtails Liver Inflammation

A. Das, S. Basu, D. Bandyopadhyay…·S. N. Bhattacharyya

The paper shows that inhibiting MMP2 on extracellular vesicles reduces miR-122 transfer to macrophages, thereby decreasing liver inflammation.

DOI 10.1016/j.isci.2021.103428

humanbulk RNA-seq

𝕏 PostBluesky

BiophysicsbioRxivSep 11, 2020

Vital Insights into Prokaryotic Genome Compaction by Nucleoid-Associated Protein (NAP) and Illustration of DNA Flexure Angles at Single Molecule Resolution

D. Purkait, D. Bandyopadhyay, P. P. Mishra

This study uses single-molecule FRET to analyze DNA bending dynamics of IHF, revealing conformational flexibility and insights into prokaryotic genome compaction.

DOI 10.1016/j.ijbiomac.2020.12.194

experimental assaychromatin & epigenetic regulation

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BiochemistrybioRxivApr 6, 2020

CryoEM Structure of CtBP2 Confirms Tetrameric Architecture

A. M. Jecrois, M. M. Dcona, X. Deng…·W. E. Royer

The paper presents cryoEM structures of CtBP2 confirming its tetrameric architecture in the presence of NADH and shows that tetramer formation is essential for transcriptional activity and cell migration.

DOI 10.1016/j.str.2020.11.008

humanprotein structure

𝕏 PostBluesky