Author

D. Libkind

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Microbiology· 1

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Research Focus:gene regulatory network inference· 4 Approach:statistical model· 4 Organism:yeast· 4 Assay:whole-genome sequencing· 3 Research Focus:chromatin & epigenetic regulation· 2 Assay:DNA methylation· 2 Assay:ChIP-seq· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

A. B. Hulfachor· 3 shared C. T. Hittinger· 3 shared J. Kominek· 3 shared A. L. LaBella· 2 shared A. Rokas· 2 shared C. Goncalves· 2 shared C. P. Kurtzman· 2 shared D. A. Opulente· 2 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersEvolutionary Biology

A. B. Hulfachor

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Author profile →

4 papers

Recent·Most cited

Genomic and ecological factors shaping specialism and generalism across an entire subphylum

D. A. Opulente, A. L. LaBella, M.-C. Harrison, J. F. Wolters, C. Liu, Y. Li, J. Kominek, J. L. Steenwyk, H. R. Stoneman, J. VanDenAvond, C. R. Miller, Q. K. Langdon, M. Silva, C. Goncalves, E. J. Ubbelohde, , C. T. Hittinger

The paper analyzes genomic, metabolic, and ecological data from nearly all Saccharomycotina yeast species to show that intrinsic genetic factors, not trade-offs or extrinsic factors, drive variation in niche breadth.

bioRxiv · Jun 19, 2023 · PreprintEvolutionary Biology

Natural Variation in Diauxic Shift between Patagonian Saccharomyces eubayanus Strains

J. Molinet, J. I. Eizaguirre, P. A. Quintrel, N. Bellora, C. A. Villarroel, P. Villarreal, J. Benavides-Parra, R. F. Nespolo, D. Libkind, F. A. Cubillos

The paper identifies genetic and chromatin regulators responsible for natural variation in diauxic shift between Saccharomyces eubayanus strains, showing how HAP complex variants affect fermentation efficiency and sugar preference.

bioRxiv · Jul 11, 2022Microbiology

Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces

D. Peris, E. J. Ubbelohde, M. C. Kuang, J. Kominek, Q. K. Langdon, M. Adams, J. A. Koshalek, A. B. Hulfachor, D. A. Opulente, D. J. Hall, K. Hyma, J. C. Fay, J.-B. Leducq, G. Charron, C. R. Landry, , C. T. Hittinger

The paper studies genetic and phenotypic diversity across 1,800 Saccharomyces strains, revealing insights into macroevolutionary processes and gene flow effects on traits.

bioRxiv · Mar 30, 2022Evolutionary Biology

Extensive loss of cell cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts

J. L. Steenwyk, D. Opulente, J. Kominek, X.-X. Shen, X. Zhou, A. L. LaBella, N. P. Bradley, B. F. Eichman, N. Cadez, D. Libkind, J. DeVirgilio, A. B. Hulfachor, C. P. Kurtzman, C. T. Hittinger, A. Rokas

This study identifies two lineages in Hanseniaspora yeasts, showing the FEL lineage lost more cell cycle and DNA repair genes than the SEL lineage, likely due to accelerated evolution and increased mutational load.

bioRxiv · Feb 11, 2019Evolutionary Biology