Author

D. Shalon

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1

Frequent Co-Authors

A. Aranda-Diaz· 1 shared A. D. Patterson· 1 shared A. Violette· 1 shared C. Nafarzadegan· 1 shared D. Relman· 1 shared E. Lemus Silva· 1 shared E. Yaffe· 1 shared G. Triadafilopoulos· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMicrobiology

A. Aranda-Diaz

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Improved mouse models of the small intestine microbiota using region-specific sampling from humans

R. Culver, S. P. Spencer, A. Violette, E. Lemus Silva, T. Takeuchi, C. Nafarzadegan, S. Higginbottom, D. Shalon, J. Sonnenburg, K. C. Huang

The paper develops improved mouse models of the small intestine microbiota using region-specific human intestinal sampling and in vitro culturing, showing increased diversity and reproducibility in colonization.

bioRxiv · Apr 24, 2024 · PreprintMicrobiology

Profiling of the human intestinal microbiome and bile acids under physiologic conditions using an ingestible sampling device

D. Shalon, R. N. Culver, J. A. Grembi, J. Folz, P. Treit, L. Dethlefsen, X. Meng, E. Yaffe, S. Spencer, H. Shi, A. Aranda-Diaz, A. D. Patterson, G. Triadafilopoulos, S. P. Holmes, M. Mann, , K. Huang

The paper develops an ingestible device to collect intestinal samples and identifies regional differences in microbiota and bile acids compared to stool.

bioRxiv · Jan 19, 2022 · PreprintMicrobiology