Author

Dan Shi

Xiamen University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:bulk RNA-seq· 1 Assay:cryo-EM· 1 Research Focus:database / resource· 1 Assay:electronic health records· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:human· 1

Frequent Co-Authors

Johan HattneiD· 2 shared M. Jason de la Cruz· 2 shared Tamir GoneniD· 2 shared Calina Glynn· 1 shared Duilio Cascio· 1 shared Fan LiniD· 1 shared Guang LiiD· 1 shared Jennifer Miao· 1 shared

Activity by Year

2017-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBiophysics

Johan HattneORCID

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Author profile →

3 papers

Recent·Most cited

Integrate Heterogeneous NGS and TGS Data to Boost Genome-free Transcriptome Research

Yangmei Qin, Zhe Lin, Dan Shi, Mindong Zhong, Te An, Lin-Shan Chen, Yiquan Wang, Fan Lin, Guang Li, Zhi‐Liang Ji

This paper develops a genome-free method to improve transcriptome assembly using integrated NGS and TGS data in amphioxus, expanding gene annotations and creating a new database.

bioRxiv · May 27, 2020 · PreprintBioinformatics

A method to minimize condenser lens-induced hysteresis effects in a JEOL JEM-3200FSC microscope to enable stable cryoEM low-dose operations

M. Jason de la Cruz, Michael Martynowycz, Johan Hattne, Dan Shi, Tamir Gonen

The paper introduces a method to reduce magnetic hysteresis in a JEOL JEM-3200FSC microscope, enabling stable low-dose cryoEM operations by independently ramping condenser lenses before data collection.

bioRxiv · Jun 21, 2017 · PreprintBiophysics

MicroED Structures from Micrometer Thick Protein Crystals

Michael W. Martynowycz, Calina Glynn, Jennifer Miao, M. Jason de la Cruz, Johan Hattne, Dan Shi, Duilio Cascio, Jose Rodriguez, Tamir Gonen

This study shows that MicroED can determine atomic resolution protein structures from crystals up to one micrometer thick, much thicker than previously thought possible.

bioRxiv · Jun 20, 2017 · PreprintBiochemistry