bioRxivBiochemistryPreprint
MicroED Structures from Micrometer Thick Protein Crystals
Michael W. MartynowycziD, Calina Glynn, Jennifer Miao, M. Jason de la Cruz, Johan HattneiD, Dan Shi, Duilio Cascio, Jose Rodriguez, Tamir GoneniD
Abstract
Theoretical calculations suggest that crystals exceeding 100 nm thickness are excluded by dynamical scattering from successful structure determination using microcrystal electron diffraction (MicroED). These calculations are at odds with experimental results where MicroED structures have been determined from significantly thicker crystals. Here we systematically evaluate the influence of thickness on the accuracy of MicroED intensities and the ability to determine structures from protein crystals one micrometer thick. To do so, we compare ab initio structures of a human prion protein segment determined from thin crystals to those determined from crystals up to one micrometer thick. We also compare molecular replacement solutions from crystals of varying thickness for a larger globular protein, proteinase K. Our results indicate that structures can be reliably determined from crystals at least an order of magnitude thicker than previously suggested by simulation, opening the possibility for an even broader range of MicroED experiments.\n\nSummaryAtomic resolution protein structures can be determined by MicroED from crystals that surpass the theoretical maximum thickness limit by an order of magnitude.
- organism: human
- assay: electronic health records
- research focus: protein structure prediction
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A Workflow for Protein Structure Determination from Thin Crystal Lamella by Micro-Electron Diffraction
E. V. Beale, D. G. Waterman, … p. zhang·bioRxiv·Apr 30, 2020
- Benchmarking ideal sample thickness in cryo-EM using MicroED
M. W. Martynowycz, M. T. B. Clabbers, … T. Gonen·bioRxiv·Jul 2, 2021
- Solving the first novel protein structure by 3D micro-crystal electron diffraction
Hongyi Xu, Hugo Lebrette, … Martin Högbom·Science AdvancesPeer-reviewed·Aug 2, 2019
- In situ protein micro-crystal fabrication by cryo-FIB for electron diffraction
- Ab initio phasing macromolecular structures using electron-counted MicroED data
M. W. Martynowycz, M. T. B. Clabbers, … T. Gonen·bioRxiv·Oct 16, 2021
- Collection of continuous rotation MicroED Data from Ion Beam Milled Crystals of Any Size
M. Martynowycz, W. Zhao, … T. Gonen·bioRxiv·Sep 24, 2018