Author

F. Matsen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 3 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Assay:proteomics· 4 Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1

Frequent Co-Authors

J. M. Overbaugh· 2 shared A. Dhar· 1 shared A. Gavryushkin· 1 shared A. S. Dingens· 1 shared C. Simonich· 1 shared C. Whidden· 1 shared C. Wolf· 1 shared D. Arenz· 1 shared

Activity by Year

2016-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersImmunology

J. M. Overbaugh

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Author profile →

5 papers

Recent·Most cited

Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein after infection and/or vaccination

M. E. Garrett, J. G. Galloway, C. Wolf, J. K. Logue, N. Franko, H. Y. Chu, F. Matsen, J. M. Overbaugh

This study characterizes antibody responses to SARS-CoV-2 Spike protein after infection and vaccination, identifying epitope binding patterns and escape mutation profiles.

bioRxiv · Oct 5, 2021Immunology

Functional development of a V3-specific broadly neutralizing antibody isolated from a case of HIV superinfection

M. M. Shipley, V. Mangala Prasad, L. E. Doepker, A. S. Dingens, D. K. Ralph, E. Harkins, A. Dhar, D. Arenz, V. Chohan, H. Weight, K. Mandaliya, J. D. Bloom, F. Matsen, K. K. Lee, J. M. Overbaugh

This study characterizes the development of a V3-specific broadly neutralizing antibody from an HIV superinfection case, revealing unique epitope recognition and escape mechanisms.

bioRxiv · Mar 15, 2021Microbiology

Diversity and function of maternal HIV-1-specific antibodies at the time of vertical transmission

L. Doepker, C. Simonich, D. Ralph, T. A. Gobillot, M. Garrett, V. Vigdorovich, D. N. Sather, R. Nduati, F. Matsen, J. Overbaugh

This study isolates and characterizes HIV-specific neutralizing antibodies from a mother of a vertically infected infant, revealing their diversity and functional properties.

bioRxiv · Sep 23, 2019Immunology

Benchmarking tree and ancestral sequence inference for B cell receptor sequences

K. Davidsen, F. Matsen

This study benchmarks classical and B cell-specific phylogenetic tools on simulated and real B cell receptor sequences to assess their performance in tree structure and ancestral sequence inference.

bioRxiv · Apr 25, 2018Immunology

The combinatorics of discrete time-trees: theory and open problems

A. Gavryushkin, C. Whidden, F. Matsen

This paper studies discrete approximations of time-trees, analyzing graph-theoretic properties and proposing open problems for phylogenetic applications.

bioRxiv · Jul 12, 2016Evolutionary Biology