Author

F. S. Midani

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:host-pathogen & immune response· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. A. Weil· 2 shared F. Qadri· 2 shared J. B. Harris· 2 shared R. C. LaRocque· 2 shared A. I. Khan· 1 shared B. J. Shapiro· 1 shared C. Geigel· 1 shared D. Chac· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersMicrobiology

A. A. Weil

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Author profile →

4 papers

Recent·Most cited

Control of Clostridiodes difficile virulence and physiology by the flagellin homeostasis checkpoint FliC-FliW-CsrA in the absence of motility

D. Zhu, K. Wozniak, F. S. Midani, S. Wang, X. Sun, R. Britton

This study investigates the role of the FliC-FliW-CsrA network in C. difficile virulence and physiology, showing that these proteins regulate toxin production and metabolism even in non-motile strains.

bioRxiv · Nov 8, 2022 · PreprintMicrobiology

Impact of a human gut microbe on Vibrio cholerae host colonization through biofilm enhancement

K. Barrasso, D. Chac, M. D. Debele, C. Geigel, J. B. Harris, R. C. LaRocque, F. S. Midani, F. Qadri, J. Yan, A. A. Weil, W.-L. Ng

This study shows that Paracoccus aminovorans enhances Vibrio cholerae colonization in the murine intestine through dual-species biofilm formation dependent on VPS and other biofilm components.

bioRxiv · Feb 1, 2021Microbiology

AMiGA: software for automated Analysis of Microbial Growth Assays

F. S. Midani, J. Collins, R. A. Britton

AMiGA automates the analysis of microbial growth assays, estimating growth parameters and testing differential growth without assuming growth curve shapes.

bioRxiv · Nov 4, 2020Microbiology

Predicting Vibrio cholerae infection and disease severity using metagenomics in a prospective cohort study

I. Levade, M. M. Saber, F. S. Midani, F. Chowdhury, A. I. Khan, Y. Begum, E. T. Ryan, L. A. David, S. B. Calderwood, J. B. Harris, R. C. LaRocque, F. Qadri, B. J. Shapiro, A. A. Weil

This study uses metagenomic sequencing to predict cholera infection and disease severity in a cohort, identifying protective bacterial species and genes.

bioRxiv · Feb 25, 2020Microbiology