Feng Liu

Ark-ADMET: endpoint-specific selection of molecular representations and hyperparameters for gradient-boosted ADMET models under the Therapeutics Data Commons benchmark protocol

Ark-ADMET selects endpoint-specific molecular representations and hyperparameters for gradient-boosted ADMET models, achieving competitive performance without new architectures or shared representations.

Metagenomic Evidence for Horizontal Gene Transfer and Functional Convergence in the Oral Microbiome of Cohabiting Dogs and Owners

This study identifies horizontal gene transfer and functional convergence in the oral microbiomes of cohabiting dogs and owners through metagenomic analysis.

Site- and Structure-Specific Characterization of Glycoproteins of H11: Potent Vaccine Candidates against Parasitic Worm Haemonchus

The paper characterizes glycoproteins of Haemonchus contortus using mass spectrometry, identifying glycosylation sites and structures, and showing their potential as vaccine targets.

CRISPR/Cas9-mediated germline mutagenesis in the subsocial parasitoid wasp, Sclerodermus guani

This study uses CRISPR/Cas9 to achieve germline gene knockout in the subsocial wasp Sclerodermus guani, revealing a white-eye phenotype in homozygous mutants.

iFORM: incorporating Find Occurrence of Regulatory Motifs

iFORM is a tool that improves the accuracy and sensitivity of TF motif scanning by integrating results from multiple motif discovery programs.

Genome-wide identification and characterisation of HOT regions in the human genome

The paper identifies and characterizes HOT regions across human cell types, showing their association with developmental genes and unique epigenetic features.

PEDLA: predicting enhancers with a deep learning-based algorithmic framework

PEDLA uses deep learning to predict enhancers from heterogeneous data, achieving high accuracy across multiple cell types.