Author

Holly Paddock

University of Oregon

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Approach:statistical model· 2 Organism:zebrafish· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Organism:Drosophila· 1 Approach:machine learning (classical)· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Amy SingeriD· 3 shared Ceri E. Van SlykeiD· 3 shared Christian PichiD· 3 shared David S. FashenaiD· 3 shared Leyla RuzickaiD· 3 shared Monte WesterfieldiD· 3 shared Sridhar RamachandraniD· 3 shared Yvonne M. BradfordiD· 3 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Amy SingerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Updates to the Alliance of Genome Resources Central Infrastructure

Suzi Aleksander, Anna V. Anagnostopoulos, Giulia Antonazzo, Valerio Arnaboldi, Helen L. Attrill, Andrés Becerra, Susan M Bello, Olin Blodgett, Yvonne M. Bradford, Carol J. Bult, Scott Cain, Brian R. Calvi, Seth Carbon, Juancarlos Chan, Wen J. Chen, , Aaron M. Zorn

The paper updates the Alliance of Genome Resources' central infrastructure, adding tools and enhancing data management and curation capabilities.

bioRxiv · Nov 20, 2023 · PreprintBioinformatics

From Multi-Allele Fish to Non-Standard Environments, How ZFIN Assigns Phenotypes, Human Disease Models, and Gene Expression Annotations to Genes

Yvonne M. Bradford, Ceri E. Van Slyke, Douglas G. Howe, David S. Fashena, Ken Frazer, Ryan Martin, Holly Paddock, Christian Pich, Sridhar Ramachandran, Leyla Ruzicka, Amy Singer, Ryan Taylor, Wei-Chia Tseng, Monte Westerfield

The paper describes how ZFIN annotates phenotype, expression, and disease model data in zebrafish research across different experimental designs.

Genetics · Mar 2, 2023Peer-reviewedBioinformatics

Zebrafish Information Network, the knowledgebase for Danio rerio research

Yvonne M. Bradford, Ceri E. Van Slyke, Leyla Ruzicka, Amy Singer, Anne E. Eagle, David S. Fashena, Douglas G. Howe, Ken Frazer, Ryan Martin, Holly Paddock, Christian Pich, Sridhar Ramachandran, Monte Westerfield

The paper describes ZFIN, a central repository for zebrafish genetic and genomic data, emphasizing its role in curating, integrating, and making data FAIR for research.

Genetics · Feb 15, 2022Peer-reviewedGenetics