Author

I. O. Vvedenskaya

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 3 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:E. coli· 4 Approach:experimental assay· 4 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Assay:ATAC-seq· 1

Frequent Co-Authors

B. E. Nickels· 4 shared D. M. Taylor· 3 shared R. H. Ebright· 3 shared Y. Zhang· 3 shared J. T. Winkelman· 2 shared P. Shah· 2 shared A. A. Shiriaeva· 1 shared A. Cope· 1 shared

Activity by Year

2017-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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4 shared papersBiochemistry

B. E. Nickels

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4 papers

Recent·Most cited

BiochemistrybioRxivApr 6, 2021

Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli

K. S. Skalenko, L. Li, Y. Zhang…·B. E. Nickels

The paper identifies promoter sequence determinants and structural basis of primer-dependent transcription initiation in E. coli using MASTER and biochemical studies.

DOI 10.1073/pnas.2106388118

E. coliDNA methylation

𝕏 PostBluesky

BiochemistrybioRxivDec 21, 2019

XACT-seq comprehensively defines the promoter-position and promoter-sequence determinants for initial-transcription pausing

J. T. Winkelman, C. Pukhrambam, I. O. Vvedenskaya…·B. E. Nickels

XACT-seq identifies promoter-position and sequence determinants for initial-transcription pausing in Escherichia coli by measuring RNAP-active-center position relative to DNA with single-nucleotide resolution.

DOI 10.1016/j.molcel.2020.07.006

E. coliATAC-seq

𝕏 PostBluesky

MicrobiologybioRxivMar 30, 2019

Detection of Spacer Precursors Formed In Vivo During Primed CRISPR Adaptation

A. A. Shiriaeva, E. Savitskaya, K. A. Datsenko…·E. Semenova

The paper develops a method to detect spacer precursors formed during primed CRISPR adaptation in vivo and identifies their structural and functional characteristics.

DOI 10.1038/s41467-019-12417-w

E. coliDNA methylation

𝕏 PostBluesky

BiochemistrybioRxivDec 29, 2017

“CapZyme-Seq” comprehensively defines promoter-sequence determinants for RNA 5’ capping with NAD+

I. O. Vvedenskaya, J. G. Bird, Y. Zhang…·B. E. Nickels

The paper introduces CapZyme-Seq to detect NCIN-capped RNA and identifies a consensus promoter sequence for NAD+ capping in E. coli.

DOI 10.1016/j.molcel.2018.03.014

E. colibulk RNA-seq

𝕏 PostBluesky